Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29284 | 3' | -61.2 | NC_006150.1 | + | 36797 | 1.11 | 0.001299 |
Target: 5'- aGCGGCCUCGCGCAGACUGCGCACCGGc -3' miRNA: 3'- -CGCCGGAGCGCGUCUGACGCGUGGCC- -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 174630 | 0.75 | 0.307487 |
Target: 5'- gGCGGCCUCGacgGCAGAUUGaugagcaGCGCCa- -3' miRNA: 3'- -CGCCGGAGCg--CGUCUGACg------CGUGGcc -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 536 | 0.74 | 0.349159 |
Target: 5'- cGCGGCCUCG-GCAcGACgGCG-ACUGGg -3' miRNA: 3'- -CGCCGGAGCgCGU-CUGaCGCgUGGCC- -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 107260 | 0.74 | 0.363916 |
Target: 5'- aUGGCUgUGCgGCAGAUUGCGCcGCCGGc -3' miRNA: 3'- cGCCGGaGCG-CGUCUGACGCG-UGGCC- -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 116005 | 0.72 | 0.443914 |
Target: 5'- uGCGGCCUauccaCGCcGGCUGCGUGgCGGa -3' miRNA: 3'- -CGCCGGAgc---GCGuCUGACGCGUgGCC- -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 37060 | 0.72 | 0.46107 |
Target: 5'- uGCGGaCCUaucucacgccggUGCGCAGuCUGCGCgaggccgcucucGCCGGc -3' miRNA: 3'- -CGCC-GGA------------GCGCGUCuGACGCG------------UGGCC- -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 88076 | 0.71 | 0.523661 |
Target: 5'- aCGGCg-C-CGCGGACUGCGcCACCGa -3' miRNA: 3'- cGCCGgaGcGCGUCUGACGC-GUGGCc -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 103496 | 0.7 | 0.548683 |
Target: 5'- cCGGCCuguccaucauugcgUCGCGCAGgaucccagccACUGCGCACgcucuCGGu -3' miRNA: 3'- cGCCGG--------------AGCGCGUC----------UGACGCGUG-----GCC- -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 150063 | 0.7 | 0.551487 |
Target: 5'- cGCGGCCa-GC-CAGGCU-CGCACCGc -3' miRNA: 3'- -CGCCGGagCGcGUCUGAcGCGUGGCc -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 119801 | 0.7 | 0.551487 |
Target: 5'- cGgGGCCgcaGCGCGGuAgaGCGCGCCa- -3' miRNA: 3'- -CgCCGGag-CGCGUC-UgaCGCGUGGcc -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 88406 | 0.7 | 0.560864 |
Target: 5'- uGCGGU---GCGCGGACgGcCGCGCUGGg -3' miRNA: 3'- -CGCCGgagCGCGUCUGaC-GCGUGGCC- -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 3012 | 0.7 | 0.570285 |
Target: 5'- -aGGCagaGCGCAGGCacgGCGCGuuGGa -3' miRNA: 3'- cgCCGgagCGCGUCUGa--CGCGUggCC- -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 216249 | 0.69 | 0.617853 |
Target: 5'- aGCGGUCUCgGUGCGGGCugagauccUGCGCAaCGa -3' miRNA: 3'- -CGCCGGAG-CGCGUCUG--------ACGCGUgGCc -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 120252 | 0.69 | 0.627419 |
Target: 5'- aCGGCUgccCGaGCAGACUGUGUGCCa- -3' miRNA: 3'- cGCCGGa--GCgCGUCUGACGCGUGGcc -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 88661 | 0.69 | 0.646553 |
Target: 5'- cGCGGCagacccaGCGCGGcCguccGCGCACCGc -3' miRNA: 3'- -CGCCGgag----CGCGUCuGa---CGCGUGGCc -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 216900 | 0.68 | 0.656109 |
Target: 5'- uUGGCCUCGuCGCucauGAUaaUGUGCGCCu- -3' miRNA: 3'- cGCCGGAGC-GCGu---CUG--ACGCGUGGcc -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 91072 | 0.68 | 0.656109 |
Target: 5'- uGCGGCaCcCGCGguGA-UGUGUGCUGGa -3' miRNA: 3'- -CGCCG-GaGCGCguCUgACGCGUGGCC- -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 118777 | 0.68 | 0.659926 |
Target: 5'- aCGGCCUcCGgGCAGcaGCUGCgaggugucauggucaGCACCGc -3' miRNA: 3'- cGCCGGA-GCgCGUC--UGACG---------------CGUGGCc -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 88345 | 0.68 | 0.674213 |
Target: 5'- -gGGCCUCGCgacgcccccaccuGCGaGCUGUGCGguccCCGGg -3' miRNA: 3'- cgCCGGAGCG-------------CGUcUGACGCGU----GGCC- -5' |
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29284 | 3' | -61.2 | NC_006150.1 | + | 129653 | 0.68 | 0.703495 |
Target: 5'- cGUGGCCcgccUCGuCGCGGACcugccugcugUGCGCGCUc- -3' miRNA: 3'- -CGCCGG----AGC-GCGUCUG----------ACGCGUGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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