miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29284 3' -61.2 NC_006150.1 + 536 0.74 0.349159
Target:  5'- cGCGGCCUCG-GCAcGACgGCG-ACUGGg -3'
miRNA:   3'- -CGCCGGAGCgCGU-CUGaCGCgUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 770 0.66 0.782253
Target:  5'- cGCcGCCUaGCGuCAGGCcacccucgccugccUGCGCGCCGc -3'
miRNA:   3'- -CGcCGGAgCGC-GUCUG--------------ACGCGUGGCc -5'
29284 3' -61.2 NC_006150.1 + 1011 0.66 0.801785
Target:  5'- gGUGGCCUgaCGC-UAGGCgGCGCAgCGa -3'
miRNA:   3'- -CGCCGGA--GCGcGUCUGaCGCGUgGCc -5'
29284 3' -61.2 NC_006150.1 + 1991 0.66 0.818196
Target:  5'- aCGGCCUCGCcuGCAGcugaACcGCGCGugugcCCGa -3'
miRNA:   3'- cGCCGGAGCG--CGUC----UGaCGCGU-----GGCc -5'
29284 3' -61.2 NC_006150.1 + 1994 0.67 0.757642
Target:  5'- gGgGGCCUcCGCggucugggcugagGCGGuCUGCGgUGCCGGu -3'
miRNA:   3'- -CgCCGGA-GCG-------------CGUCuGACGC-GUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 3012 0.7 0.570285
Target:  5'- -aGGCagaGCGCAGGCacgGCGCGuuGGa -3'
miRNA:   3'- cgCCGgagCGCGUCUGa--CGCGUggCC- -5'
29284 3' -61.2 NC_006150.1 + 36797 1.11 0.001299
Target:  5'- aGCGGCCUCGCGCAGACUGCGCACCGGc -3'
miRNA:   3'- -CGCCGGAGCGCGUCUGACGCGUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 37060 0.72 0.46107
Target:  5'- uGCGGaCCUaucucacgccggUGCGCAGuCUGCGCgaggccgcucucGCCGGc -3'
miRNA:   3'- -CGCC-GGA------------GCGCGUCuGACGCG------------UGGCC- -5'
29284 3' -61.2 NC_006150.1 + 72273 0.67 0.749562
Target:  5'- gGCGGCCUCG-GCAGcggccaguuCUGCG-ACCu- -3'
miRNA:   3'- -CGCCGGAGCgCGUCu--------GACGCgUGGcc -5'
29284 3' -61.2 NC_006150.1 + 88076 0.71 0.523661
Target:  5'- aCGGCg-C-CGCGGACUGCGcCACCGa -3'
miRNA:   3'- cGCCGgaGcGCGUCUGACGC-GUGGCc -5'
29284 3' -61.2 NC_006150.1 + 88247 0.66 0.782253
Target:  5'- aGCGGCCgCGCagcccuggcgggggGCGGAgCgUGCGCucgGCUGGg -3'
miRNA:   3'- -CGCCGGaGCG--------------CGUCU-G-ACGCG---UGGCC- -5'
29284 3' -61.2 NC_006150.1 + 88345 0.68 0.674213
Target:  5'- -gGGCCUCGCgacgcccccaccuGCGaGCUGUGCGguccCCGGg -3'
miRNA:   3'- cgCCGGAGCG-------------CGUcUGACGCGU----GGCC- -5'
29284 3' -61.2 NC_006150.1 + 88406 0.7 0.560864
Target:  5'- uGCGGU---GCGCGGACgGcCGCGCUGGg -3'
miRNA:   3'- -CGCCGgagCGCGUCUGaC-GCGUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 88661 0.69 0.646553
Target:  5'- cGCGGCagacccaGCGCGGcCguccGCGCACCGc -3'
miRNA:   3'- -CGCCGgag----CGCGUCuGa---CGCGUGGCc -5'
29284 3' -61.2 NC_006150.1 + 91072 0.68 0.656109
Target:  5'- uGCGGCaCcCGCGguGA-UGUGUGCUGGa -3'
miRNA:   3'- -CGCCG-GaGCGCguCUgACGCGUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 92369 0.67 0.749562
Target:  5'- -gGGCCggGCGguggggauuCGGGCgagucGCGCACCGGc -3'
miRNA:   3'- cgCCGGagCGC---------GUCUGa----CGCGUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 92450 0.66 0.818196
Target:  5'- aGCGGCgaggagGCGguGACcGUGuCGCCGGc -3'
miRNA:   3'- -CGCCGgag---CGCguCUGaCGC-GUGGCC- -5'
29284 3' -61.2 NC_006150.1 + 103496 0.7 0.548683
Target:  5'- cCGGCCuguccaucauugcgUCGCGCAGgaucccagccACUGCGCACgcucuCGGu -3'
miRNA:   3'- cGCCGG--------------AGCGCGUC----------UGACGCGUG-----GCC- -5'
29284 3' -61.2 NC_006150.1 + 107260 0.74 0.363916
Target:  5'- aUGGCUgUGCgGCAGAUUGCGCcGCCGGc -3'
miRNA:   3'- cGCCGGaGCG-CGUCUGACGCG-UGGCC- -5'
29284 3' -61.2 NC_006150.1 + 109186 0.66 0.810061
Target:  5'- aGCgGGCUguguugCGUGCAGACgagGCGCAggauUUGGc -3'
miRNA:   3'- -CG-CCGGa-----GCGCGUCUGa--CGCGU----GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.