Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29303 | 3' | -53.4 | NC_006150.1 | + | 181201 | 0.7 | 0.918652 |
Target: 5'- gGCGCGaaGCGAguUUGCgGCGUgCACCCg -3' miRNA: 3'- -CGCGCgcUGCU--AAUGgUGUA-GUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 167839 | 0.69 | 0.939214 |
Target: 5'- aGCGUGUuaGACGGaaaUACUcCGUCACCCUu -3' miRNA: 3'- -CGCGCG--CUGCUa--AUGGuGUAGUGGGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 119346 | 0.68 | 0.969456 |
Target: 5'- gGCGUGUGAgGAUgGCUuCGUCGCCa- -3' miRNA: 3'- -CGCGCGCUgCUAaUGGuGUAGUGGga -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 207020 | 0.67 | 0.983651 |
Target: 5'- -gGCGUGAcCGuuuUUGCCGCcUCaACCCUg -3' miRNA: 3'- cgCGCGCU-GCu--AAUGGUGuAG-UGGGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 101775 | 0.66 | 0.985421 |
Target: 5'- aUGCGUGACGugcUGCCGCAcggacUGCCCa -3' miRNA: 3'- cGCGCGCUGCua-AUGGUGUa----GUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 111752 | 0.66 | 0.98704 |
Target: 5'- cUGCGCGACGA---CCAUcUCAgCCg -3' miRNA: 3'- cGCGCGCUGCUaauGGUGuAGUgGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 150364 | 0.66 | 0.98704 |
Target: 5'- uGCGCGCGcucgucagaGCGAUacugugUACC-CGcCGCCCg -3' miRNA: 3'- -CGCGCGC---------UGCUA------AUGGuGUaGUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 220755 | 0.66 | 0.988089 |
Target: 5'- aUGCGCGACGuuggcGCCACuGaucuacggcaacuuUCACCCa -3' miRNA: 3'- cGCGCGCUGCuaa--UGGUG-U--------------AGUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 111892 | 0.66 | 0.989861 |
Target: 5'- -gGCGCGuuUGGUcgACCAgCAUCGCCUa -3' miRNA: 3'- cgCGCGCu-GCUAa-UGGU-GUAGUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 152472 | 0.66 | 0.991078 |
Target: 5'- cUGCGCGGCGGUgGCCGaaaagCAgCCa -3' miRNA: 3'- cGCGCGCUGCUAaUGGUgua--GUgGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 20879 | 0.67 | 0.981724 |
Target: 5'- -gGCGCGAUGAgucuCCAaGUCGCCa- -3' miRNA: 3'- cgCGCGCUGCUaau-GGUgUAGUGGga -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 66072 | 0.67 | 0.979631 |
Target: 5'- cGCGCGCGuuaGGUUGgUGCAgcgcUCGCUCUg -3' miRNA: 3'- -CGCGCGCug-CUAAUgGUGU----AGUGGGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 206617 | 0.67 | 0.979631 |
Target: 5'- aGCGCGCGcACag--GCCGCAucucuuucaUCACCUUc -3' miRNA: 3'- -CGCGCGC-UGcuaaUGGUGU---------AGUGGGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 126293 | 0.67 | 0.972284 |
Target: 5'- -gGCGCaGACG-UUGCCGCA-CAUCCc -3' miRNA: 3'- cgCGCG-CUGCuAAUGGUGUaGUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 116327 | 0.68 | 0.966428 |
Target: 5'- cGUGCGCGuACaGAaccuaUACCGCGUCuuuCCCa -3' miRNA: 3'- -CGCGCGC-UG-CUa----AUGGUGUAGu--GGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 129910 | 0.68 | 0.964513 |
Target: 5'- cGCGCacagcaggcagguccGCGACGAggcggGCCACGUagggaccucgCGCCCc -3' miRNA: 3'- -CGCG---------------CGCUGCUaa---UGGUGUA----------GUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 88415 | 0.69 | 0.952209 |
Target: 5'- gGCGCGCGGCccagGAgccccaUACCGCAggauccaGCCCg -3' miRNA: 3'- -CGCGCGCUG----CUa-----AUGGUGUag-----UGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 80660 | 0.69 | 0.943774 |
Target: 5'- uUGCGUGACGAcuUUGCCACcgAUCACg-- -3' miRNA: 3'- cGCGCGCUGCU--AAUGGUG--UAGUGgga -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 109846 | 0.71 | 0.880901 |
Target: 5'- cGUGUGCGGCGAUcaACUACcUCACCa- -3' miRNA: 3'- -CGCGCGCUGCUAa-UGGUGuAGUGGga -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 118067 | 0.73 | 0.783535 |
Target: 5'- cGCGUGCGcCGAgaagUGCCGCG-CACuCCUa -3' miRNA: 3'- -CGCGCGCuGCUa---AUGGUGUaGUG-GGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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