miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29303 3' -53.4 NC_006150.1 + 2421 0.66 0.987648
Target:  5'- aGCGacgGCGACGAcaacgaaaacaccgUACC-CAUCACaCCUg -3'
miRNA:   3'- -CGCg--CGCUGCUa-------------AUGGuGUAGUG-GGA- -5'
29303 3' -53.4 NC_006150.1 + 2806 0.67 0.974918
Target:  5'- aGCGCuccacugcuGCGuuGGUcgUACCACuUCGCCCg -3'
miRNA:   3'- -CGCG---------CGCugCUA--AUGGUGuAGUGGGa -5'
29303 3' -53.4 NC_006150.1 + 47688 0.67 0.974918
Target:  5'- uCG-GCGACGGcgGCCGCGUCcUCCUc -3'
miRNA:   3'- cGCgCGCUGCUaaUGGUGUAGuGGGA- -5'
29303 3' -53.4 NC_006150.1 + 86184 0.67 0.977364
Target:  5'- gGCGCGCcgcccccuucGACGGUUauucgACCGCuuuUCgACCCa -3'
miRNA:   3'- -CGCGCG----------CUGCUAA-----UGGUGu--AG-UGGGa -5'
29303 3' -53.4 NC_006150.1 + 122919 0.67 0.979631
Target:  5'- aGCGgugauugcccUGCGACGcuAUUACCGgCAUCACgCCg -3'
miRNA:   3'- -CGC----------GCGCUGC--UAAUGGU-GUAGUG-GGa -5'
29303 3' -53.4 NC_006150.1 + 59290 0.67 0.981724
Target:  5'- -aGCGCGGCGAUUcagcACC-CGUC-UCCa -3'
miRNA:   3'- cgCGCGCUGCUAA----UGGuGUAGuGGGa -5'
29303 3' -53.4 NC_006150.1 + 117286 0.66 0.985421
Target:  5'- cGCGgGUGACGA--GCCGCAggauaGCCa- -3'
miRNA:   3'- -CGCgCGCUGCUaaUGGUGUag---UGGga -5'
29303 3' -53.4 NC_006150.1 + 125458 0.66 0.985421
Target:  5'- cUGCGCGACGccgGCCugAcggUCGCgCCg -3'
miRNA:   3'- cGCGCGCUGCuaaUGGugU---AGUG-GGa -5'
29303 3' -53.4 NC_006150.1 + 150102 0.66 0.98704
Target:  5'- uCGgGCGGCGggUACaCAgUAUCGCUCUg -3'
miRNA:   3'- cGCgCGCUGCuaAUG-GU-GUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 215309 0.67 0.972284
Target:  5'- cGUG-GCGGCGAgucuCCGCAUUuCCCUc -3'
miRNA:   3'- -CGCgCGCUGCUaau-GGUGUAGuGGGA- -5'
29303 3' -53.4 NC_006150.1 + 140886 0.67 0.972284
Target:  5'- uCGCGCGACGAaaaUACCauucaACGUCugCa- -3'
miRNA:   3'- cGCGCGCUGCUa--AUGG-----UGUAGugGga -5'
29303 3' -53.4 NC_006150.1 + 119346 0.68 0.969456
Target:  5'- gGCGUGUGAgGAUgGCUuCGUCGCCa- -3'
miRNA:   3'- -CGCGCGCUgCUAaUGGuGUAGUGGga -5'
29303 3' -53.4 NC_006150.1 + 132999 0.79 0.479577
Target:  5'- cGCGCG-GACGAgccUGCaCAUAUCGCCCUg -3'
miRNA:   3'- -CGCGCgCUGCUa--AUG-GUGUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 219208 0.74 0.746172
Target:  5'- uGCGCGCGACacaagcGCUugGUCACUCUg -3'
miRNA:   3'- -CGCGCGCUGcuaa--UGGugUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 73362 0.74 0.755681
Target:  5'- aGUGCGCaGGCaauauCCGCAUCACCCg -3'
miRNA:   3'- -CGCGCG-CUGcuaauGGUGUAGUGGGa -5'
29303 3' -53.4 NC_006150.1 + 119759 0.72 0.854483
Target:  5'- gGCGCGCGcuggcuuucaccgucAUGGaagGCCACAUCGCCa- -3'
miRNA:   3'- -CGCGCGC---------------UGCUaa-UGGUGUAGUGGga -5'
29303 3' -53.4 NC_006150.1 + 73095 0.7 0.900794
Target:  5'- uGCuGCGCaACcuguacgACCGCAUCACCCUg -3'
miRNA:   3'- -CG-CGCGcUGcuaa---UGGUGUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 109653 0.7 0.906977
Target:  5'- aGCGCG-GACGccaaAUUGCCAUAUUcCCCa -3'
miRNA:   3'- -CGCGCgCUGC----UAAUGGUGUAGuGGGa -5'
29303 3' -53.4 NC_006150.1 + 181201 0.7 0.918652
Target:  5'- gGCGCGaaGCGAguUUGCgGCGUgCACCCg -3'
miRNA:   3'- -CGCGCgcUGCU--AAUGgUGUA-GUGGGa -5'
29303 3' -53.4 NC_006150.1 + 167839 0.69 0.939214
Target:  5'- aGCGUGUuaGACGGaaaUACUcCGUCACCCUu -3'
miRNA:   3'- -CGCGCG--CUGCUa--AUGGuGUAGUGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.