miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29303 3' -53.4 NC_006150.1 + 2421 0.66 0.987648
Target:  5'- aGCGacgGCGACGAcaacgaaaacaccgUACC-CAUCACaCCUg -3'
miRNA:   3'- -CGCg--CGCUGCUa-------------AUGGuGUAGUG-GGA- -5'
29303 3' -53.4 NC_006150.1 + 2806 0.67 0.974918
Target:  5'- aGCGCuccacugcuGCGuuGGUcgUACCACuUCGCCCg -3'
miRNA:   3'- -CGCG---------CGCugCUA--AUGGUGuAGUGGGa -5'
29303 3' -53.4 NC_006150.1 + 20879 0.67 0.981724
Target:  5'- -gGCGCGAUGAgucuCCAaGUCGCCa- -3'
miRNA:   3'- cgCGCGCUGCUaau-GGUgUAGUGGga -5'
29303 3' -53.4 NC_006150.1 + 38160 0.66 0.991078
Target:  5'- cGCGCG-GACGGUc-CCGagagCGCCCUg -3'
miRNA:   3'- -CGCGCgCUGCUAauGGUgua-GUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 38219 0.66 0.988518
Target:  5'- aGCGUGUGACGAU--CCACAgg-UCCg -3'
miRNA:   3'- -CGCGCGCUGCUAauGGUGUaguGGGa -5'
29303 3' -53.4 NC_006150.1 + 47688 0.67 0.974918
Target:  5'- uCG-GCGACGGcgGCCGCGUCcUCCUc -3'
miRNA:   3'- cGCgCGCUGCUaaUGGUGUAGuGGGA- -5'
29303 3' -53.4 NC_006150.1 + 59290 0.67 0.981724
Target:  5'- -aGCGCGGCGAUUcagcACC-CGUC-UCCa -3'
miRNA:   3'- cgCGCGCUGCUAA----UGGuGUAGuGGGa -5'
29303 3' -53.4 NC_006150.1 + 66072 0.67 0.979631
Target:  5'- cGCGCGCGuuaGGUUGgUGCAgcgcUCGCUCUg -3'
miRNA:   3'- -CGCGCGCug-CUAAUgGUGU----AGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 73095 0.7 0.900794
Target:  5'- uGCuGCGCaACcuguacgACCGCAUCACCCUg -3'
miRNA:   3'- -CG-CGCGcUGcuaa---UGGUGUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 73362 0.74 0.755681
Target:  5'- aGUGCGCaGGCaauauCCGCAUCACCCg -3'
miRNA:   3'- -CGCGCG-CUGcuaauGGUGUAGUGGGa -5'
29303 3' -53.4 NC_006150.1 + 74287 1.09 0.007812
Target:  5'- gGCGCGCGACGAUUACCACAUCACCCUc -3'
miRNA:   3'- -CGCGCGCUGCUAAUGGUGUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 80660 0.69 0.943774
Target:  5'- uUGCGUGACGAcuUUGCCACcgAUCACg-- -3'
miRNA:   3'- cGCGCGCUGCU--AAUGGUG--UAGUGgga -5'
29303 3' -53.4 NC_006150.1 + 86184 0.67 0.977364
Target:  5'- gGCGCGCcgcccccuucGACGGUUauucgACCGCuuuUCgACCCa -3'
miRNA:   3'- -CGCGCG----------CUGCUAA-----UGGUGu--AG-UGGGa -5'
29303 3' -53.4 NC_006150.1 + 88415 0.69 0.952209
Target:  5'- gGCGCGCGGCccagGAgccccaUACCGCAggauccaGCCCg -3'
miRNA:   3'- -CGCGCGCUG----CUa-----AUGGUGUag-----UGGGa -5'
29303 3' -53.4 NC_006150.1 + 101775 0.66 0.985421
Target:  5'- aUGCGUGACGugcUGCCGCAcggacUGCCCa -3'
miRNA:   3'- cGCGCGCUGCua-AUGGUGUa----GUGGGa -5'
29303 3' -53.4 NC_006150.1 + 109653 0.7 0.906977
Target:  5'- aGCGCG-GACGccaaAUUGCCAUAUUcCCCa -3'
miRNA:   3'- -CGCGCgCUGC----UAAUGGUGUAGuGGGa -5'
29303 3' -53.4 NC_006150.1 + 109846 0.71 0.880901
Target:  5'- cGUGUGCGGCGAUcaACUACcUCACCa- -3'
miRNA:   3'- -CGCGCGCUGCUAa-UGGUGuAGUGGga -5'
29303 3' -53.4 NC_006150.1 + 111752 0.66 0.98704
Target:  5'- cUGCGCGACGA---CCAUcUCAgCCg -3'
miRNA:   3'- cGCGCGCUGCUaauGGUGuAGUgGGa -5'
29303 3' -53.4 NC_006150.1 + 111892 0.66 0.989861
Target:  5'- -gGCGCGuuUGGUcgACCAgCAUCGCCUa -3'
miRNA:   3'- cgCGCGCu-GCUAa-UGGU-GUAGUGGGa -5'
29303 3' -53.4 NC_006150.1 + 116327 0.68 0.966428
Target:  5'- cGUGCGCGuACaGAaccuaUACCGCGUCuuuCCCa -3'
miRNA:   3'- -CGCGCGC-UG-CUa----AUGGUGUAGu--GGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.