miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29303 3' -53.4 NC_006150.1 + 74287 1.09 0.007812
Target:  5'- gGCGCGCGACGAUUACCACAUCACCCUc -3'
miRNA:   3'- -CGCGCGCUGCUAAUGGUGUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 132999 0.79 0.479577
Target:  5'- cGCGCG-GACGAgccUGCaCAUAUCGCCCUg -3'
miRNA:   3'- -CGCGCgCUGCUa--AUG-GUGUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 219208 0.74 0.746172
Target:  5'- uGCGCGCGACacaagcGCUugGUCACUCUg -3'
miRNA:   3'- -CGCGCGCUGcuaa--UGGugUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 73362 0.74 0.755681
Target:  5'- aGUGCGCaGGCaauauCCGCAUCACCCg -3'
miRNA:   3'- -CGCGCG-CUGcuaauGGUGUAGUGGGa -5'
29303 3' -53.4 NC_006150.1 + 118067 0.73 0.783535
Target:  5'- cGCGUGCGcCGAgaagUGCCGCG-CACuCCUa -3'
miRNA:   3'- -CGCGCGCuGCUa---AUGGUGUaGUG-GGA- -5'
29303 3' -53.4 NC_006150.1 + 119759 0.72 0.854483
Target:  5'- gGCGCGCGcuggcuuucaccgucAUGGaagGCCACAUCGCCa- -3'
miRNA:   3'- -CGCGCGC---------------UGCUaa-UGGUGUAGUGGga -5'
29303 3' -53.4 NC_006150.1 + 109846 0.71 0.880901
Target:  5'- cGUGUGCGGCGAUcaACUACcUCACCa- -3'
miRNA:   3'- -CGCGCGCUGCUAa-UGGUGuAGUGGga -5'
29303 3' -53.4 NC_006150.1 + 73095 0.7 0.900794
Target:  5'- uGCuGCGCaACcuguacgACCGCAUCACCCUg -3'
miRNA:   3'- -CG-CGCGcUGcuaa---UGGUGUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 109653 0.7 0.906977
Target:  5'- aGCGCG-GACGccaaAUUGCCAUAUUcCCCa -3'
miRNA:   3'- -CGCGCgCUGC----UAAUGGUGUAGuGGGa -5'
29303 3' -53.4 NC_006150.1 + 181201 0.7 0.918652
Target:  5'- gGCGCGaaGCGAguUUGCgGCGUgCACCCg -3'
miRNA:   3'- -CGCGCgcUGCU--AAUGgUGUA-GUGGGa -5'
29303 3' -53.4 NC_006150.1 + 167839 0.69 0.939214
Target:  5'- aGCGUGUuaGACGGaaaUACUcCGUCACCCUu -3'
miRNA:   3'- -CGCGCG--CUGCUa--AUGGuGUAGUGGGA- -5'
29303 3' -53.4 NC_006150.1 + 80660 0.69 0.943774
Target:  5'- uUGCGUGACGAcuUUGCCACcgAUCACg-- -3'
miRNA:   3'- cGCGCGCUGCU--AAUGGUG--UAGUGgga -5'
29303 3' -53.4 NC_006150.1 + 88415 0.69 0.952209
Target:  5'- gGCGCGCGGCccagGAgccccaUACCGCAggauccaGCCCg -3'
miRNA:   3'- -CGCGCGCUG----CUa-----AUGGUGUag-----UGGGa -5'
29303 3' -53.4 NC_006150.1 + 129910 0.68 0.964513
Target:  5'- cGCGCacagcaggcagguccGCGACGAggcggGCCACGUagggaccucgCGCCCc -3'
miRNA:   3'- -CGCG---------------CGCUGCUaa---UGGUGUA----------GUGGGa -5'
29303 3' -53.4 NC_006150.1 + 116327 0.68 0.966428
Target:  5'- cGUGCGCGuACaGAaccuaUACCGCGUCuuuCCCa -3'
miRNA:   3'- -CGCGCGC-UG-CUa----AUGGUGUAGu--GGGa -5'
29303 3' -53.4 NC_006150.1 + 119346 0.68 0.969456
Target:  5'- gGCGUGUGAgGAUgGCUuCGUCGCCa- -3'
miRNA:   3'- -CGCGCGCUgCUAaUGGuGUAGUGGga -5'
29303 3' -53.4 NC_006150.1 + 126293 0.67 0.972284
Target:  5'- -gGCGCaGACG-UUGCCGCA-CAUCCc -3'
miRNA:   3'- cgCGCG-CUGCuAAUGGUGUaGUGGGa -5'
29303 3' -53.4 NC_006150.1 + 140886 0.67 0.972284
Target:  5'- uCGCGCGACGAaaaUACCauucaACGUCugCa- -3'
miRNA:   3'- cGCGCGCUGCUa--AUGG-----UGUAGugGga -5'
29303 3' -53.4 NC_006150.1 + 215309 0.67 0.972284
Target:  5'- cGUG-GCGGCGAgucuCCGCAUUuCCCUc -3'
miRNA:   3'- -CGCgCGCUGCUaau-GGUGUAGuGGGA- -5'
29303 3' -53.4 NC_006150.1 + 47688 0.67 0.974918
Target:  5'- uCG-GCGACGGcgGCCGCGUCcUCCUc -3'
miRNA:   3'- cGCgCGCUGCUaaUGGUGUAGuGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.