miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29306 3' -52.6 NC_006150.1 + 32333 0.66 0.995242
Target:  5'- gAUGAGGGUgGUCUUCCGCuGUCCgugCaCCa -3'
miRNA:   3'- -UGCUUUUA-CAGGAGGUG-CAGGa--GgGG- -5'
29306 3' -52.6 NC_006150.1 + 159807 0.66 0.995242
Target:  5'- -aGAAg--GUCCUCCAgaaGUCCccUCCUCu -3'
miRNA:   3'- ugCUUuuaCAGGAGGUg--CAGG--AGGGG- -5'
29306 3' -52.6 NC_006150.1 + 63196 0.66 0.993664
Target:  5'- -aGAAAAUccaCCUCCAgCG-CCUCCCa -3'
miRNA:   3'- ugCUUUUAca-GGAGGU-GCaGGAGGGg -5'
29306 3' -52.6 NC_006150.1 + 119191 0.66 0.992731
Target:  5'- uCGAAgugGAUGUUguagcgUUCCGgGUCgUCCCCg -3'
miRNA:   3'- uGCUU---UUACAG------GAGGUgCAGgAGGGG- -5'
29306 3' -52.6 NC_006150.1 + 202531 0.66 0.991691
Target:  5'- cACGAuucAGAUG-CaCUCUACGggCCUCCaCCu -3'
miRNA:   3'- -UGCU---UUUACaG-GAGGUGCa-GGAGG-GG- -5'
29306 3' -52.6 NC_006150.1 + 208962 0.67 0.990537
Target:  5'- cGCGAAcugcuGAUGU-CUCUACGUCCauUCUUCa -3'
miRNA:   3'- -UGCUU-----UUACAgGAGGUGCAGG--AGGGG- -5'
29306 3' -52.6 NC_006150.1 + 130476 0.67 0.990537
Target:  5'- cACGGAAucuacaaagcUGUCacgCACGUCCUCCaCCg -3'
miRNA:   3'- -UGCUUUu---------ACAGgagGUGCAGGAGG-GG- -5'
29306 3' -52.6 NC_006150.1 + 8921 0.67 0.98926
Target:  5'- aACGucaaAGGGUGUCCguuggCCGCGUUCcgagUUCCCa -3'
miRNA:   3'- -UGC----UUUUACAGGa----GGUGCAGG----AGGGG- -5'
29306 3' -52.6 NC_006150.1 + 127612 0.67 0.987705
Target:  5'- -aGGAuccacGUGUCCUCCAUGaUCCUUacaguaggugcaaCCCa -3'
miRNA:   3'- ugCUUu----UACAGGAGGUGC-AGGAG-------------GGG- -5'
29306 3' -52.6 NC_006150.1 + 199694 0.67 0.986943
Target:  5'- uCGGAAGgagcgcuuuccauguUGUUCUCgGCGUUCUCCUg -3'
miRNA:   3'- uGCUUUU---------------ACAGGAGgUGCAGGAGGGg -5'
29306 3' -52.6 NC_006150.1 + 53605 0.67 0.984616
Target:  5'- uCGggGAaGUcCCUCCGCGUCCUg--- -3'
miRNA:   3'- uGCuuUUaCA-GGAGGUGCAGGAgggg -5'
29306 3' -52.6 NC_006150.1 + 47690 0.67 0.984616
Target:  5'- gGCGAcg--G-CggCCGCGUCCUCCUCg -3'
miRNA:   3'- -UGCUuuuaCaGgaGGUGCAGGAGGGG- -5'
29306 3' -52.6 NC_006150.1 + 53971 0.68 0.980761
Target:  5'- aGCGAgguAAAUGUUCUCggugCACGUCCaggaaaauuccuUUCCCg -3'
miRNA:   3'- -UGCU---UUUACAGGAG----GUGCAGG------------AGGGG- -5'
29306 3' -52.6 NC_006150.1 + 181506 0.68 0.980761
Target:  5'- -------cGcCCUCCGCGUCCgCCUCg -3'
miRNA:   3'- ugcuuuuaCaGGAGGUGCAGGaGGGG- -5'
29306 3' -52.6 NC_006150.1 + 36039 0.68 0.978583
Target:  5'- aGC-AAAGUGagCUCgGCGUCCUCCagCCg -3'
miRNA:   3'- -UGcUUUUACagGAGgUGCAGGAGG--GG- -5'
29306 3' -52.6 NC_006150.1 + 168448 0.68 0.976227
Target:  5'- uACGAAAAgauuUCCUaaCCGCcUCCUCgCCCa -3'
miRNA:   3'- -UGCUUUUac--AGGA--GGUGcAGGAG-GGG- -5'
29306 3' -52.6 NC_006150.1 + 32447 0.69 0.954219
Target:  5'- cCGugGAUGUUCUUUACuGUCCUCgCCa -3'
miRNA:   3'- uGCuuUUACAGGAGGUG-CAGGAGgGG- -5'
29306 3' -52.6 NC_006150.1 + 207135 0.7 0.95022
Target:  5'- uUGGAGAUG-CCUCCGCauuGUCCUCaucgaaCCu -3'
miRNA:   3'- uGCUUUUACaGGAGGUG---CAGGAGg-----GG- -5'
29306 3' -52.6 NC_006150.1 + 148162 0.7 0.95022
Target:  5'- --cAAAAUGUCCUCCacaguaACGUCCaaagacauaaaUCCCUg -3'
miRNA:   3'- ugcUUUUACAGGAGG------UGCAGG-----------AGGGG- -5'
29306 3' -52.6 NC_006150.1 + 107087 0.7 0.945996
Target:  5'- uUGggGAUGUC--CCGCGUCgUaCCCCg -3'
miRNA:   3'- uGCuuUUACAGgaGGUGCAGgA-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.