miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29320 3' -55.9 NC_006150.1 + 107532 0.67 0.941356
Target:  5'- uCAGuugaGCAGGCccgaGAaGCGC-CGGCGGCGc -3'
miRNA:   3'- -GUC----UGUUCG----CUaUGCGuGCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 107727 0.66 0.949879
Target:  5'- aGGGCuugaaGGGUGGUuuugaGguCGGCGGCGGu -3'
miRNA:   3'- gUCUG-----UUCGCUAug---CguGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 108854 0.66 0.961044
Target:  5'- uGGuGCGGGCG-UugGCucuCGGCGGCc- -3'
miRNA:   3'- gUC-UGUUCGCuAugCGu--GCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 112425 0.66 0.957534
Target:  5'- aUAGACA-GCGGUu----CGGCGGUGGu -3'
miRNA:   3'- -GUCUGUuCGCUAugcguGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 117172 0.67 0.931947
Target:  5'- gAGGCAGGUGAcacACGaAUGGCGGCc- -3'
miRNA:   3'- gUCUGUUCGCUa--UGCgUGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 117312 0.66 0.964348
Target:  5'- uCGGACGuGCcc--CGCAUGGCGGCcauGGa -3'
miRNA:   3'- -GUCUGUuCGcuauGCGUGCCGCCG---CC- -5'
29320 3' -55.9 NC_006150.1 + 118377 0.66 0.961044
Target:  5'- cCAGGauaGAGUGGUGgGCgAUGGCGGUa- -3'
miRNA:   3'- -GUCUg--UUCGCUAUgCG-UGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 120749 0.69 0.857011
Target:  5'- -uGACAGGuCGGgcagACG-ACGGUGGUGGg -3'
miRNA:   3'- guCUGUUC-GCUa---UGCgUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 123488 1.09 0.004897
Target:  5'- uCAGACAAGCGAUACGCACGGCGGCGGc -3'
miRNA:   3'- -GUCUGUUCGCUAUGCGUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 123774 0.66 0.961044
Target:  5'- --aACGAGC--UGCGCAUaGCGGUGGa -3'
miRNA:   3'- gucUGUUCGcuAUGCGUGcCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 124076 0.67 0.945727
Target:  5'- gAGGCGGGUGAggaaGCA-GGUGGCGu -3'
miRNA:   3'- gUCUGUUCGCUaug-CGUgCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 130480 0.72 0.745947
Target:  5'- uCAGGCGgcuauggcugcGGCGGUGCGagaaagucaaGCGGCGGCa- -3'
miRNA:   3'- -GUCUGU-----------UCGCUAUGCg---------UGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 135061 0.69 0.878609
Target:  5'- gUAGACAGGCcAUaaacgcaaugACGCugGGaaGGCGGa -3'
miRNA:   3'- -GUCUGUUCGcUA----------UGCGugCCg-CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 136764 0.67 0.926906
Target:  5'- aGGAUGAGUGGcGCGUguuCGGCGGagaGGa -3'
miRNA:   3'- gUCUGUUCGCUaUGCGu--GCCGCCg--CC- -5'
29320 3' -55.9 NC_006150.1 + 137818 0.71 0.755279
Target:  5'- aGGGCGcugAGUGGagagGCGCGgcaGGCGGCGGa -3'
miRNA:   3'- gUCUGU---UCGCUa---UGCGUg--CCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 142124 0.66 0.964348
Target:  5'- -cGGguAGCGGUAaGCgGgGGCGGUGGg -3'
miRNA:   3'- guCUguUCGCUAUgCG-UgCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 147868 0.67 0.926906
Target:  5'- -cGGCAAGCaguuAUACGCGCGuaGGCa- -3'
miRNA:   3'- guCUGUUCGc---UAUGCGUGCcgCCGcc -5'
29320 3' -55.9 NC_006150.1 + 150066 0.73 0.652817
Target:  5'- uCAGGCGcacacaaguaacuccAGCGGUgcACGUGCucgGGCGGCGGg -3'
miRNA:   3'- -GUCUGU---------------UCGCUA--UGCGUG---CCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 152491 0.68 0.910442
Target:  5'- -uGAUuaaugcGGCGAcGCucuGCGCGGCGGUGGc -3'
miRNA:   3'- guCUGu-----UCGCUaUG---CGUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 154576 0.72 0.727011
Target:  5'- ----uGAGCGAUGaGCACGGCGGCc- -3'
miRNA:   3'- gucugUUCGCUAUgCGUGCCGCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.