miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29320 3' -55.9 NC_006150.1 + 665 0.66 0.957534
Target:  5'- cCGGaACGGGcCGAcagGgGgACGGCGGUGGu -3'
miRNA:   3'- -GUC-UGUUC-GCUa--UgCgUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 1024 0.74 0.599343
Target:  5'- gCAGGCAGGCGAggguggccugACGCuaGGCGGCGc -3'
miRNA:   3'- -GUCUGUUCGCUa---------UGCGugCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 1750 0.73 0.688285
Target:  5'- gGGGCAGGUGAgu-GggUGGCGGCGGa -3'
miRNA:   3'- gUCUGUUCGCUaugCguGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 29053 0.7 0.817285
Target:  5'- gAGACugGAGCGAUGCagGCuuUGGUGGUGGu -3'
miRNA:   3'- gUCUG--UUCGCUAUG--CGu-GCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 32912 0.77 0.474999
Target:  5'- gCGGA--GGCGGaGCGCGguCGGCGGCGGg -3'
miRNA:   3'- -GUCUguUCGCUaUGCGU--GCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 51636 0.68 0.916154
Target:  5'- cCAGACcGGCGAUAC-CGuCuGCGGgGGa -3'
miRNA:   3'- -GUCUGuUCGCUAUGcGU-GcCGCCgCC- -5'
29320 3' -55.9 NC_006150.1 + 68530 0.66 0.967451
Target:  5'- gAGACA--CGucuCGCuCGGCGGUGGu -3'
miRNA:   3'- gUCUGUucGCuauGCGuGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 71032 0.67 0.926906
Target:  5'- gCGGcGCAAGgGGUGCGCuCGcuggcgcacauGCGGUGGg -3'
miRNA:   3'- -GUC-UGUUCgCUAUGCGuGC-----------CGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 76274 0.67 0.945727
Target:  5'- gAGGCGGGgGccauCGCGCGGuUGGCGa -3'
miRNA:   3'- gUCUGUUCgCuau-GCGUGCC-GCCGCc -5'
29320 3' -55.9 NC_006150.1 + 81451 0.71 0.764508
Target:  5'- gAGAuCAGGCGuccCGUgccagaugggGCGGCGGCGGc -3'
miRNA:   3'- gUCU-GUUCGCuauGCG----------UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 85899 0.66 0.961044
Target:  5'- -uGGC-GGCGcUGUGUACGGCGGCcGGu -3'
miRNA:   3'- guCUGuUCGCuAUGCGUGCCGCCG-CC- -5'
29320 3' -55.9 NC_006150.1 + 86417 0.67 0.943131
Target:  5'- gGGGCGGcGCGccagGCGCACGGUgcacauuuccgugcuGGUGGu -3'
miRNA:   3'- gUCUGUU-CGCua--UGCGUGCCG---------------CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 88269 0.72 0.736522
Target:  5'- gGGGCgGAGCG-UGCGCuCGGCugGGCGGc -3'
miRNA:   3'- gUCUG-UUCGCuAUGCGuGCCG--CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 88428 0.67 0.921642
Target:  5'- cCAGAaGGGCGGggGCGCGCGGCccaGGa -3'
miRNA:   3'- -GUCUgUUCGCUa-UGCGUGCCGccgCC- -5'
29320 3' -55.9 NC_006150.1 + 90994 0.69 0.884733
Target:  5'- gAGACAcacccgaGGCGggGCGaggaGgGGUGGCGGu -3'
miRNA:   3'- gUCUGU-------UCGCuaUGCg---UgCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 92283 0.68 0.904509
Target:  5'- uGGA--GGCGggAUGCugGCGGUGGUGGg -3'
miRNA:   3'- gUCUguUCGCuaUGCG--UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 92382 0.77 0.465928
Target:  5'- gGGAuuCGGGCGAgucGCGCAcCGGCGGCGa -3'
miRNA:   3'- gUCU--GUUCGCUa--UGCGU-GCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 92695 0.66 0.967451
Target:  5'- -cGAuCAAGCGAUccAgGUACgaGGCGGCGu -3'
miRNA:   3'- guCU-GUUCGCUA--UgCGUG--CCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 102305 0.7 0.825574
Target:  5'- -cGGCGguugccgcGGCGGcgACGUccugacACGGCGGCGGa -3'
miRNA:   3'- guCUGU--------UCGCUa-UGCG------UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 103264 0.66 0.957534
Target:  5'- uGGACAGGcCGGUG---ACGGCaGCGGg -3'
miRNA:   3'- gUCUGUUC-GCUAUgcgUGCCGcCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.