miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29320 3' -55.9 NC_006150.1 + 123488 1.09 0.004897
Target:  5'- uCAGACAAGCGAUACGCACGGCGGCGGc -3'
miRNA:   3'- -GUCUGUUCGCUAUGCGUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 92382 0.77 0.465928
Target:  5'- gGGAuuCGGGCGAgucGCGCAcCGGCGGCGa -3'
miRNA:   3'- gUCU--GUUCGCUa--UGCGU-GCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 32912 0.77 0.474999
Target:  5'- gCGGA--GGCGGaGCGCGguCGGCGGCGGg -3'
miRNA:   3'- -GUCUguUCGCUaUGCGU--GCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 181285 0.76 0.484158
Target:  5'- gGGAgAGGCGGcUGCcCugGGCGGCGGc -3'
miRNA:   3'- gUCUgUUCGCU-AUGcGugCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 1024 0.74 0.599343
Target:  5'- gCAGGCAGGCGAggguggccugACGCuaGGCGGCGc -3'
miRNA:   3'- -GUCUGUUCGCUa---------UGCGugCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 150066 0.73 0.652817
Target:  5'- uCAGGCGcacacaaguaacuccAGCGGUgcACGUGCucgGGCGGCGGg -3'
miRNA:   3'- -GUCUGU---------------UCGCUA--UGCGUG---CCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 180473 0.73 0.658753
Target:  5'- --cGCGGGgGaAUGCgGCGCGGUGGCGGa -3'
miRNA:   3'- gucUGUUCgC-UAUG-CGUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 1750 0.73 0.688285
Target:  5'- gGGGCAGGUGAgu-GggUGGCGGCGGa -3'
miRNA:   3'- gUCUGUUCGCUaugCguGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 154576 0.72 0.727011
Target:  5'- ----uGAGCGAUGaGCACGGCGGCc- -3'
miRNA:   3'- gucugUUCGCUAUgCGUGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 88269 0.72 0.736522
Target:  5'- gGGGCgGAGCG-UGCGCuCGGCugGGCGGc -3'
miRNA:   3'- gUCUG-UUCGCuAUGCGuGCCG--CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 130480 0.72 0.745947
Target:  5'- uCAGGCGgcuauggcugcGGCGGUGCGagaaagucaaGCGGCGGCa- -3'
miRNA:   3'- -GUCUGU-----------UCGCUAUGCg---------UGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 137818 0.71 0.755279
Target:  5'- aGGGCGcugAGUGGagagGCGCGgcaGGCGGCGGa -3'
miRNA:   3'- gUCUGU---UCGCUa---UGCGUg--CCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 81451 0.71 0.764508
Target:  5'- gAGAuCAGGCGuccCGUgccagaugggGCGGCGGCGGc -3'
miRNA:   3'- gUCU-GUUCGCuauGCG----------UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 216307 0.71 0.764508
Target:  5'- -cGACGAGC---GCGaCACGGCGGCa- -3'
miRNA:   3'- guCUGUUCGcuaUGC-GUGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 221137 0.71 0.773627
Target:  5'- gGGGCGuGCGGgagACGUACGGCaGGCa- -3'
miRNA:   3'- gUCUGUuCGCUa--UGCGUGCCG-CCGcc -5'
29320 3' -55.9 NC_006150.1 + 193875 0.71 0.791503
Target:  5'- cUAGACGAGCGAUcauCGCuuagcUGGCuGCGGc -3'
miRNA:   3'- -GUCUGUUCGCUAu--GCGu----GCCGcCGCC- -5'
29320 3' -55.9 NC_006150.1 + 29053 0.7 0.817285
Target:  5'- gAGACugGAGCGAUGCagGCuuUGGUGGUGGu -3'
miRNA:   3'- gUCUG--UUCGCUAUG--CGu-GCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 102305 0.7 0.825574
Target:  5'- -cGGCGguugccgcGGCGGcgACGUccugacACGGCGGCGGa -3'
miRNA:   3'- guCUGU--------UCGCUa-UGCG------UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 120749 0.69 0.857011
Target:  5'- -uGACAGGuCGGgcagACG-ACGGUGGUGGg -3'
miRNA:   3'- guCUGUUC-GCUa---UGCgUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 170812 0.69 0.857011
Target:  5'- -uGGCGAGUaAUACuGCACGGggucaGGCGGg -3'
miRNA:   3'- guCUGUUCGcUAUG-CGUGCCg----CCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.