miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29320 3' -55.9 NC_006150.1 + 117172 0.67 0.931947
Target:  5'- gAGGCAGGUGAcacACGaAUGGCGGCc- -3'
miRNA:   3'- gUCUGUUCGCUa--UGCgUGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 170812 0.69 0.857011
Target:  5'- -uGGCGAGUaAUACuGCACGGggucaGGCGGg -3'
miRNA:   3'- guCUGUUCGcUAUG-CGUGCCg----CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 181153 0.69 0.864408
Target:  5'- gAGGCGAGCGG---GCAgGGCGG-GGa -3'
miRNA:   3'- gUCUGUUCGCUaugCGUgCCGCCgCC- -5'
29320 3' -55.9 NC_006150.1 + 219729 0.69 0.871609
Target:  5'- gGGGCuguGAGUGAcaguUGCaGCagcaGCGGCGGCGGc -3'
miRNA:   3'- gUCUG---UUCGCU----AUG-CG----UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 135061 0.69 0.878609
Target:  5'- gUAGACAGGCcAUaaacgcaaugACGCugGGaaGGCGGa -3'
miRNA:   3'- -GUCUGUUCGcUA----------UGCGugCCg-CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 90994 0.69 0.884733
Target:  5'- gAGACAcacccgaGGCGggGCGaggaGgGGUGGCGGu -3'
miRNA:   3'- gUCUGU-------UCGCuaUGCg---UgCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 92283 0.68 0.904509
Target:  5'- uGGA--GGCGggAUGCugGCGGUGGUGGg -3'
miRNA:   3'- gUCUguUCGCuaUGCG--UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 51636 0.68 0.916154
Target:  5'- cCAGACcGGCGAUAC-CGuCuGCGGgGGa -3'
miRNA:   3'- -GUCUGuUCGCUAUGcGU-GcCGCCgCC- -5'
29320 3' -55.9 NC_006150.1 + 136764 0.67 0.926906
Target:  5'- aGGAUGAGUGGcGCGUguuCGGCGGagaGGa -3'
miRNA:   3'- gUCUGUUCGCUaUGCGu--GCCGCCg--CC- -5'
29320 3' -55.9 NC_006150.1 + 221137 0.71 0.773627
Target:  5'- gGGGCGuGCGGgagACGUACGGCaGGCa- -3'
miRNA:   3'- gUCUGUuCGCUa--UGCGUGCCG-CCGcc -5'
29320 3' -55.9 NC_006150.1 + 216307 0.71 0.764508
Target:  5'- -cGACGAGC---GCGaCACGGCGGCa- -3'
miRNA:   3'- guCUGUUCGcuaUGC-GUGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 137818 0.71 0.755279
Target:  5'- aGGGCGcugAGUGGagagGCGCGgcaGGCGGCGGa -3'
miRNA:   3'- gUCUGU---UCGCUa---UGCGUg--CCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 92382 0.77 0.465928
Target:  5'- gGGAuuCGGGCGAgucGCGCAcCGGCGGCGa -3'
miRNA:   3'- gUCU--GUUCGCUa--UGCGU-GCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 32912 0.77 0.474999
Target:  5'- gCGGA--GGCGGaGCGCGguCGGCGGCGGg -3'
miRNA:   3'- -GUCUguUCGCUaUGCGU--GCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 181285 0.76 0.484158
Target:  5'- gGGAgAGGCGGcUGCcCugGGCGGCGGc -3'
miRNA:   3'- gUCUgUUCGCU-AUGcGugCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 150066 0.73 0.652817
Target:  5'- uCAGGCGcacacaaguaacuccAGCGGUgcACGUGCucgGGCGGCGGg -3'
miRNA:   3'- -GUCUGU---------------UCGCUA--UGCGUG---CCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 180473 0.73 0.658753
Target:  5'- --cGCGGGgGaAUGCgGCGCGGUGGCGGa -3'
miRNA:   3'- gucUGUUCgC-UAUG-CGUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 154576 0.72 0.727011
Target:  5'- ----uGAGCGAUGaGCACGGCGGCc- -3'
miRNA:   3'- gucugUUCGCUAUgCGUGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 88269 0.72 0.736522
Target:  5'- gGGGCgGAGCG-UGCGCuCGGCugGGCGGc -3'
miRNA:   3'- gUCUG-UUCGCuAUGCGuGCCG--CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 130480 0.72 0.745947
Target:  5'- uCAGGCGgcuauggcugcGGCGGUGCGagaaagucaaGCGGCGGCa- -3'
miRNA:   3'- -GUCUGU-----------UCGCUAUGCg---------UGCCGCCGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.