miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29325 3' -57.1 NC_006150.1 + 173517 0.66 0.924214
Target:  5'- gGCUC-CGuGCcaacaucGCUCUgCUCAcgAGCUGCCc -3'
miRNA:   3'- -UGAGcGC-CGu------CGAGA-GAGU--UCGACGG- -5'
29325 3' -57.1 NC_006150.1 + 220412 0.66 0.924214
Target:  5'- aGCU-GCGGCAGCUaUCggUCAcacugcAGCUGgCCa -3'
miRNA:   3'- -UGAgCGCCGUCGAgAG--AGU------UCGAC-GG- -5'
29325 3' -57.1 NC_006150.1 + 118240 0.66 0.907213
Target:  5'- gGCUa-CGGCGuGCUCUC-CcAGCUGCa -3'
miRNA:   3'- -UGAgcGCCGU-CGAGAGaGuUCGACGg -5'
29325 3' -57.1 NC_006150.1 + 89613 0.66 0.906611
Target:  5'- -gUCGCGGUGcGCUCUCucuugggcgugaaUCAGGC-GCUa -3'
miRNA:   3'- ugAGCGCCGU-CGAGAG-------------AGUUCGaCGG- -5'
29325 3' -57.1 NC_006150.1 + 18382 0.66 0.894751
Target:  5'- -aUCGUGGUAGUugUUUUUCGAGUUGUa -3'
miRNA:   3'- ugAGCGCCGUCG--AGAGAGUUCGACGg -5'
29325 3' -57.1 NC_006150.1 + 181929 0.66 0.894751
Target:  5'- cUUCGUGGCuuuucucuuAGCUCUCaccaaCGAGUucUGCCg -3'
miRNA:   3'- uGAGCGCCG---------UCGAGAGa----GUUCG--ACGG- -5'
29325 3' -57.1 NC_006150.1 + 85297 0.66 0.894751
Target:  5'- aGCUCaucaaGGC-GCUCacggagCUCAAGCUGCa -3'
miRNA:   3'- -UGAGcg---CCGuCGAGa-----GAGUUCGACGg -5'
29325 3' -57.1 NC_006150.1 + 147759 0.67 0.874419
Target:  5'- --gUGCGGCAGUcuUCUUUUGAGagUGCCa -3'
miRNA:   3'- ugaGCGCCGUCG--AGAGAGUUCg-ACGG- -5'
29325 3' -57.1 NC_006150.1 + 106039 0.68 0.836457
Target:  5'- uCUCaGUGGCAGUUaUUC-CGGGCUGUCa -3'
miRNA:   3'- uGAG-CGCCGUCGA-GAGaGUUCGACGG- -5'
29325 3' -57.1 NC_006150.1 + 178842 0.68 0.836457
Target:  5'- cGC-CGCuGUGGCUUgcuggCUCcGGCUGCCa -3'
miRNA:   3'- -UGaGCGcCGUCGAGa----GAGuUCGACGG- -5'
29325 3' -57.1 NC_006150.1 + 95457 0.68 0.819982
Target:  5'- --gCGCGGCgccuuuggGGUUUUCUCA-GCUGUCa -3'
miRNA:   3'- ugaGCGCCG--------UCGAGAGAGUuCGACGG- -5'
29325 3' -57.1 NC_006150.1 + 36737 0.69 0.802852
Target:  5'- gGCUCGUGGCGGCgggUC-CGuuuCUGCCa -3'
miRNA:   3'- -UGAGCGCCGUCGag-AGaGUuc-GACGG- -5'
29325 3' -57.1 NC_006150.1 + 75521 0.7 0.699849
Target:  5'- -aUCGCGGUgucacggccgcAGCUCUCaUUGAGCgcgGCCc -3'
miRNA:   3'- ugAGCGCCG-----------UCGAGAG-AGUUCGa--CGG- -5'
29325 3' -57.1 NC_006150.1 + 147853 0.7 0.699849
Target:  5'- cGCgCGUaGGCAGCUUgagaGAGCUGCCg -3'
miRNA:   3'- -UGaGCG-CCGUCGAGagagUUCGACGG- -5'
29325 3' -57.1 NC_006150.1 + 114046 0.71 0.680077
Target:  5'- -gUCGCGGUgcgGGCUgagcggCUCGAGCUGCa -3'
miRNA:   3'- ugAGCGCCG---UCGAga----GAGUUCGACGg -5'
29325 3' -57.1 NC_006150.1 + 147599 1.11 0.002168
Target:  5'- gACUCGCGGCAGCUCUCUCAAGCUGCCu -3'
miRNA:   3'- -UGAGCGCCGUCGAGAGAGUUCGACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.