miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29328 3' -54.4 NC_006150.1 + 142962 0.66 0.978098
Target:  5'- uGCGGgacGUGAUGCcguAGUccacCGUGGUACACa -3'
miRNA:   3'- -UGCCa--CGCUGUG---UCAa---GCGCCAUGUG- -5'
29328 3' -54.4 NC_006150.1 + 216317 0.66 0.973142
Target:  5'- aACGGUGaucuCACAGUggcgUGCGGggACAUg -3'
miRNA:   3'- -UGCCACgcu-GUGUCAa---GCGCCa-UGUG- -5'
29328 3' -54.4 NC_006150.1 + 146964 0.66 0.973142
Target:  5'- cGCGGUauaucGCGGaauauCGCAGUauaUCGCGGUuauguCGCg -3'
miRNA:   3'- -UGCCA-----CGCU-----GUGUCA---AGCGCCAu----GUG- -5'
29328 3' -54.4 NC_006150.1 + 180392 0.66 0.972875
Target:  5'- gGCGGUGCGAUcgucuguuuucauGCuGUauUCGCGGUuucgaACu -3'
miRNA:   3'- -UGCCACGCUG-------------UGuCA--AGCGCCAug---UG- -5'
29328 3' -54.4 NC_006150.1 + 201784 0.66 0.971509
Target:  5'- uGCGGaugGCGAUAuaccgauucacauguCAGUaaacCGUGGUGCGCg -3'
miRNA:   3'- -UGCCa--CGCUGU---------------GUCAa---GCGCCAUGUG- -5'
29328 3' -54.4 NC_006150.1 + 22938 0.67 0.967422
Target:  5'- uCGG-GCGAUGCAGUcugaGCGGUAguaguCACa -3'
miRNA:   3'- uGCCaCGCUGUGUCAag--CGCCAU-----GUG- -5'
29328 3' -54.4 NC_006150.1 + 128475 0.67 0.960888
Target:  5'- aGCaGUGUGcCAguccCAGUUCGgGGUGCAUc -3'
miRNA:   3'- -UGcCACGCuGU----GUCAAGCgCCAUGUG- -5'
29328 3' -54.4 NC_006150.1 + 140959 0.67 0.960888
Target:  5'- uACGGUGgucccgguuaUGACGCaauuuaGGUUCGCGGccaGCACc -3'
miRNA:   3'- -UGCCAC----------GCUGUG------UCAAGCGCCa--UGUG- -5'
29328 3' -54.4 NC_006150.1 + 119522 0.67 0.953501
Target:  5'- cCGGUG-GACGCGgagcgcGUUCGCGGcgucuuugGCGCg -3'
miRNA:   3'- uGCCACgCUGUGU------CAAGCGCCa-------UGUG- -5'
29328 3' -54.4 NC_006150.1 + 71400 0.68 0.949476
Target:  5'- -gGGUGCu-CACcaAGUgCGUGGUGCGCa -3'
miRNA:   3'- ugCCACGcuGUG--UCAaGCGCCAUGUG- -5'
29328 3' -54.4 NC_006150.1 + 180463 0.68 0.93604
Target:  5'- aGCcGUGCGACGCGGgggaaugcggCGCGGUgGCGg -3'
miRNA:   3'- -UGcCACGCUGUGUCaa--------GCGCCA-UGUg -5'
29328 3' -54.4 NC_006150.1 + 119806 0.68 0.925929
Target:  5'- -aGGUGCGGggcCGCAG--CGCGGUagaGCGCg -3'
miRNA:   3'- ugCCACGCU---GUGUCaaGCGCCA---UGUG- -5'
29328 3' -54.4 NC_006150.1 + 181195 0.69 0.920525
Target:  5'- aGCGGUggcGCGAaGCgAGUUUGCGGcgUGCACc -3'
miRNA:   3'- -UGCCA---CGCUgUG-UCAAGCGCC--AUGUG- -5'
29328 3' -54.4 NC_006150.1 + 126534 0.69 0.914889
Target:  5'- aGCGGcuUGUGGCuc-GUUCGCGGU-CGCg -3'
miRNA:   3'- -UGCC--ACGCUGuguCAAGCGCCAuGUG- -5'
29328 3' -54.4 NC_006150.1 + 105416 0.69 0.909023
Target:  5'- gAauGUGCGuCGCAGUUCuuGGUACAa -3'
miRNA:   3'- -UgcCACGCuGUGUCAAGcgCCAUGUg -5'
29328 3' -54.4 NC_006150.1 + 149930 1.1 0.005275
Target:  5'- cACGGUGCGACACAGUUCGCGGUACACa -3'
miRNA:   3'- -UGCCACGCUGUGUCAAGCGCCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.