miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29328 5' -66.5 NC_006150.1 + 125712 0.66 0.552839
Target:  5'- aAGGuCGGCGCGACCgucaGgCCGGcgucgcGCAGa -3'
miRNA:   3'- cUCCcGCCGCGCUGGa---CgGGCC------CGUC- -5'
29328 5' -66.5 NC_006150.1 + 130061 0.66 0.552839
Target:  5'- aGAGGGUaacCGCGGUCUGUCCcGGCAGa -3'
miRNA:   3'- -CUCCCGcc-GCGCUGGACGGGcCCGUC- -5'
29328 5' -66.5 NC_006150.1 + 88182 0.66 0.525559
Target:  5'- -uGGGCcGCGCGcCCccGCCCuucuGGGCGGc -3'
miRNA:   3'- cuCCCGcCGCGCuGGa-CGGG----CCCGUC- -5'
29328 5' -66.5 NC_006150.1 + 150088 0.66 0.516577
Target:  5'- ---aGCGGUGC-ACgUGCUCGGGCGGc -3'
miRNA:   3'- cuccCGCCGCGcUGgACGGGCCCGUC- -5'
29328 5' -66.5 NC_006150.1 + 584 0.66 0.498804
Target:  5'- aAGGGCcGCGUguucuuggcaGACCgccaacCCCGGGCAGc -3'
miRNA:   3'- cUCCCGcCGCG----------CUGGac----GGGCCCGUC- -5'
29328 5' -66.5 NC_006150.1 + 161262 0.67 0.490019
Target:  5'- -uGGGCGGUa-GGCgUGCCCuauuGGGCGGu -3'
miRNA:   3'- cuCCCGCCGcgCUGgACGGG----CCCGUC- -5'
29328 5' -66.5 NC_006150.1 + 88419 0.67 0.489145
Target:  5'- cGGGGGC-GCGCGGCCcaggagccccaUaccgcaggauccaGCCCGcGGCGGg -3'
miRNA:   3'- -CUCCCGcCGCGCUGG-----------A-------------CGGGC-CCGUC- -5'
29328 5' -66.5 NC_006150.1 + 122217 0.67 0.464115
Target:  5'- cAGGGCGGCaucacGCcACCcagGUCCGGGUAa -3'
miRNA:   3'- cUCCCGCCG-----CGcUGGa--CGGGCCCGUc -5'
29328 5' -66.5 NC_006150.1 + 171227 0.68 0.414572
Target:  5'- -cGGGUgucuguGGCGCGGCg-GCCUGGGUAa -3'
miRNA:   3'- cuCCCG------CCGCGCUGgaCGGGCCCGUc -5'
29328 5' -66.5 NC_006150.1 + 88267 0.7 0.332732
Target:  5'- gGGGGGCGGaGCGugCgcucGgCUGGGCGGc -3'
miRNA:   3'- -CUCCCGCCgCGCugGa---CgGGCCCGUC- -5'
29328 5' -66.5 NC_006150.1 + 122390 0.7 0.325231
Target:  5'- cGGGucguccaGCGGCGCGucACCgugGCUCGGGCAu -3'
miRNA:   3'- cUCC-------CGCCGCGC--UGGa--CGGGCCCGUc -5'
29328 5' -66.5 NC_006150.1 + 86419 0.7 0.312571
Target:  5'- aGGGGGCGGCGCG-CCagGCgCaCGGuGCAc -3'
miRNA:   3'- -CUCCCGCCGCGCuGGa-CG-G-GCC-CGUc -5'
29328 5' -66.5 NC_006150.1 + 81411 0.71 0.281056
Target:  5'- aGGGGGUgGGCGCGGCCauUCaUGGGCAGg -3'
miRNA:   3'- -CUCCCG-CCGCGCUGGacGG-GCCCGUC- -5'
29328 5' -66.5 NC_006150.1 + 86471 0.74 0.16778
Target:  5'- gGAGGGUGGCGCGGagUCUGUuuGGGUc- -3'
miRNA:   3'- -CUCCCGCCGCGCU--GGACGggCCCGuc -5'
29328 5' -66.5 NC_006150.1 + 181278 0.74 0.16778
Target:  5'- gGAGGGCGGgagagGCGG-CUGCCCuGGGCGGc -3'
miRNA:   3'- -CUCCCGCCg----CGCUgGACGGG-CCCGUC- -5'
29328 5' -66.5 NC_006150.1 + 150232 0.83 0.041044
Target:  5'- cGGGGUGGCGUucGGcacCCUGCCCGGGCAGg -3'
miRNA:   3'- cUCCCGCCGCG--CU---GGACGGGCCCGUC- -5'
29328 5' -66.5 NC_006150.1 + 149966 1.08 0.00061
Target:  5'- cGAGGGCGGCGCGACCUGCCCGGGCAGg -3'
miRNA:   3'- -CUCCCGCCGCGCUGGACGGGCCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.