miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29348 3' -45.7 NC_006150.1 + 115294 0.68 0.999945
Target:  5'- uGCUAcgaaacaugacGCCGACCAUcuuacggcGAaucgagggcaaccaACUGGCCAUGCa -3'
miRNA:   3'- -CGAU-----------UGGUUGGUA--------UU--------------UGACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 214440 0.68 0.99994
Target:  5'- uGCUAAcCCGACCGUGGuACaucgauaucuggugGAUCACGCu -3'
miRNA:   3'- -CGAUU-GGUUGGUAUU-UGa-------------CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 19636 0.68 0.999932
Target:  5'- uGCUGACUuucauAACUAccuGGCUGGCCACu- -3'
miRNA:   3'- -CGAUUGG-----UUGGUau-UUGACUGGUGug -5'
29348 3' -45.7 NC_006150.1 + 120818 0.68 0.999932
Target:  5'- ---cGCCGGCCGUuguAGCUgGGCCGCGa -3'
miRNA:   3'- cgauUGGUUGGUAu--UUGA-CUGGUGUg -5'
29348 3' -45.7 NC_006150.1 + 154079 0.69 0.99992
Target:  5'- cGCaAACUuuuACCAUGuacagacaggcaccuAACgUGACCACACa -3'
miRNA:   3'- -CGaUUGGu--UGGUAU---------------UUG-ACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 65199 0.69 0.999911
Target:  5'- aGCUAGcCCGACCc-GAACUGAgCGC-Ca -3'
miRNA:   3'- -CGAUU-GGUUGGuaUUUGACUgGUGuG- -5'
29348 3' -45.7 NC_006150.1 + 149832 0.69 0.999911
Target:  5'- gGCUGGCCGcgaaccACCGUGAacACUGugUugagcagcaGCACg -3'
miRNA:   3'- -CGAUUGGU------UGGUAUU--UGACugG---------UGUG- -5'
29348 3' -45.7 NC_006150.1 + 169788 0.69 0.999883
Target:  5'- aGCUcauAACC-ACCAUAuuCUGAuugacagaaCCGCGCg -3'
miRNA:   3'- -CGA---UUGGuUGGUAUuuGACU---------GGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 88615 0.69 0.999848
Target:  5'- --cGGCCAACCcgGg---GACCGCACa -3'
miRNA:   3'- cgaUUGGUUGGuaUuugaCUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 217173 0.69 0.999804
Target:  5'- cGCUuugaaaCAAUCAUGAACaGACCGCGg -3'
miRNA:   3'- -CGAuug---GUUGGUAUUUGaCUGGUGUg -5'
29348 3' -45.7 NC_006150.1 + 182834 0.7 0.999749
Target:  5'- cCUcuCCAACCAUGgcaGACUcGACCAC-Cg -3'
miRNA:   3'- cGAuuGGUUGGUAU---UUGA-CUGGUGuG- -5'
29348 3' -45.7 NC_006150.1 + 3096 0.7 0.99968
Target:  5'- cGCUucCCAuuCCAUAGuguucacgaacGCUcGACCGCACg -3'
miRNA:   3'- -CGAuuGGUu-GGUAUU-----------UGA-CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 192057 0.7 0.99968
Target:  5'- --cGGCCAugGCCAUccAGCUGGCCAuCACc -3'
miRNA:   3'- cgaUUGGU--UGGUAu-UUGACUGGU-GUG- -5'
29348 3' -45.7 NC_006150.1 + 72297 0.7 0.99968
Target:  5'- uGC-GACCuaGACUcgGAACUGGCCACu- -3'
miRNA:   3'- -CGaUUGG--UUGGuaUUUGACUGGUGug -5'
29348 3' -45.7 NC_006150.1 + 208762 0.7 0.999673
Target:  5'- gGC-AACCAGCCAgacAGACaggccuaUGACCugACu -3'
miRNA:   3'- -CGaUUGGUUGGUa--UUUG-------ACUGGugUG- -5'
29348 3' -45.7 NC_006150.1 + 129668 0.7 0.999597
Target:  5'- cGCgGACCuGCCu---GCUGugCGCGCu -3'
miRNA:   3'- -CGaUUGGuUGGuauuUGACugGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 88738 0.7 0.999597
Target:  5'- uGCUAcuGCCAccACCGUGGACguugGACgGCGu -3'
miRNA:   3'- -CGAU--UGGU--UGGUAUUUGa---CUGgUGUg -5'
29348 3' -45.7 NC_006150.1 + 156360 0.7 0.999597
Target:  5'- cUUGGCCAACC-UGAGCaUGGCCAUu- -3'
miRNA:   3'- cGAUUGGUUGGuAUUUG-ACUGGUGug -5'
29348 3' -45.7 NC_006150.1 + 219382 0.7 0.999356
Target:  5'- aCUGGCCAaaucacgggggccACCAgagGGACgUGGCCACAg -3'
miRNA:   3'- cGAUUGGU-------------UGGUa--UUUG-ACUGGUGUg -5'
29348 3' -45.7 NC_006150.1 + 84648 0.71 0.99922
Target:  5'- uCUAAUCGcaguGCCAguucGAGCgugGACCGCACg -3'
miRNA:   3'- cGAUUGGU----UGGUa---UUUGa--CUGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.