miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29350 3' -47.2 NC_006150.1 + 195879 0.67 0.999884
Target:  5'- aCAGcAACGCUCUaaUGAAC-GAGCCAu -3'
miRNA:   3'- -GUU-UUGCGAGGcaAUUUGuCUCGGUc -5'
29350 3' -47.2 NC_006150.1 + 32894 0.67 0.999884
Target:  5'- aCAGAcaGCgGCUCCGaagcggAGGCGGAGCgCGGu -3'
miRNA:   3'- -GUUU--UG-CGAGGCaa----UUUGUCUCG-GUC- -5'
29350 3' -47.2 NC_006150.1 + 47389 0.67 0.999908
Target:  5'- gAAGGCGCUUCGcgacAAGCGGGuacuaacGCCAGa -3'
miRNA:   3'- gUUUUGCGAGGCaa--UUUGUCU-------CGGUC- -5'
29350 3' -47.2 NC_006150.1 + 87934 0.67 0.999911
Target:  5'- --cAGC-CUCgGUggggGGGCGGAGCCGGu -3'
miRNA:   3'- guuUUGcGAGgCAa---UUUGUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 31985 0.67 0.999932
Target:  5'- aAAAugGCUCCG--AAGC-GAGCgCAGc -3'
miRNA:   3'- gUUUugCGAGGCaaUUUGuCUCG-GUC- -5'
29350 3' -47.2 NC_006150.1 + 197276 0.66 0.999962
Target:  5'- aAGAGCGCgaugauagCCGUau-ACAcAGCCAGg -3'
miRNA:   3'- gUUUUGCGa-------GGCAauuUGUcUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 84777 0.66 0.999962
Target:  5'- ---cACGUaCCGcaGAugAGGGCCAGg -3'
miRNA:   3'- guuuUGCGaGGCaaUUugUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 104235 0.66 0.999972
Target:  5'- aAAGACGC-CCGUUAAGaaaAGCCGc -3'
miRNA:   3'- gUUUUGCGaGGCAAUUUgucUCGGUc -5'
29350 3' -47.2 NC_006150.1 + 87745 0.66 0.999977
Target:  5'- --uGACGCUgCGguuuuuacaggaaagGGGCGGAGUCAGa -3'
miRNA:   3'- guuUUGCGAgGCaa-------------UUUGUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 147406 0.66 0.999979
Target:  5'- gGAAACGUUCCugcu-GCAguucuGAGCCAGc -3'
miRNA:   3'- gUUUUGCGAGGcaauuUGU-----CUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 32115 0.66 0.999985
Target:  5'- aCAuAACGCgacaCGgccu-CAGGGCCAGa -3'
miRNA:   3'- -GUuUUGCGag--GCaauuuGUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 6281 0.66 0.999985
Target:  5'- -----aGCUCUGUUGuuACAGAaCCAGg -3'
miRNA:   3'- guuuugCGAGGCAAUu-UGUCUcGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.