Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29350 | 3' | -47.2 | NC_006150.1 | + | 204677 | 1.09 | 0.028361 |
Target: 5'- uCAAAACGCUCCGUUAAACAGAGCCAGu -3' miRNA: 3'- -GUUUUGCGAGGCAAUUUGUCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 140374 | 0.74 | 0.965737 |
Target: 5'- uGGAGCGcCUCUGUgcGACAGAGCguGc -3' miRNA: 3'- gUUUUGC-GAGGCAauUUGUCUCGguC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 54556 | 0.72 | 0.987498 |
Target: 5'- --uGAUGUUgacaaacaaacaCCGUUGGACAGAGUCAGg -3' miRNA: 3'- guuUUGCGA------------GGCAAUUUGUCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 148418 | 0.72 | 0.989013 |
Target: 5'- cCAAAGCGg-CCGUUGAuggaACAGAGgCAGa -3' miRNA: 3'- -GUUUUGCgaGGCAAUU----UGUCUCgGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 128459 | 0.71 | 0.993698 |
Target: 5'- aGGAACGCcUCGUUAcAGCAGuguGCCAGu -3' miRNA: 3'- gUUUUGCGaGGCAAU-UUGUCu--CGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 3034 | 0.71 | 0.994572 |
Target: 5'- uGGAGCGCUCagcagcaGgaggAGGCAGAGCgCAGg -3' miRNA: 3'- gUUUUGCGAGg------Caa--UUUGUCUCG-GUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 137052 | 0.71 | 0.995346 |
Target: 5'- uCGAAACGCaguUCCGUUGAugcGCAGAGgaUCGGu -3' miRNA: 3'- -GUUUUGCG---AGGCAAUU---UGUCUC--GGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 37438 | 0.71 | 0.996027 |
Target: 5'- cCGAAACGCUUCGggGcuuuaucaGACAGGGCUc- -3' miRNA: 3'- -GUUUUGCGAGGCaaU--------UUGUCUCGGuc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 193544 | 0.71 | 0.996027 |
Target: 5'- -uGAAgGCUCCGUagGAACAGAuaCAGa -3' miRNA: 3'- guUUUgCGAGGCAa-UUUGUCUcgGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 82183 | 0.7 | 0.99799 |
Target: 5'- -cGAGCaGCUCCGUauccucguACAGAGCCu- -3' miRNA: 3'- guUUUG-CGAGGCAauu-----UGUCUCGGuc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 82018 | 0.7 | 0.99799 |
Target: 5'- gGAAGCGCUCgauguCGUUGAGCGuuGCUAGc -3' miRNA: 3'- gUUUUGCGAG-----GCAAUUUGUcuCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 63670 | 0.69 | 0.998614 |
Target: 5'- aGGAACGCUUCGUcAAACGGcauuCCAGa -3' miRNA: 3'- gUUUUGCGAGGCAaUUUGUCuc--GGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 191349 | 0.69 | 0.999239 |
Target: 5'- uCAAGAUGU--CGUgGAGCAGAGCUAGu -3' miRNA: 3'- -GUUUUGCGagGCAaUUUGUCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 133368 | 0.69 | 0.999357 |
Target: 5'- --uAACGCUCCGcauuccccuGCGGGGCCu- -3' miRNA: 3'- guuUUGCGAGGCaauu-----UGUCUCGGuc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 126296 | 0.68 | 0.999686 |
Target: 5'- gAAGGCGCagaCGUUGccgcacaucccaGACGGAGCCGa -3' miRNA: 3'- gUUUUGCGag-GCAAU------------UUGUCUCGGUc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 88701 | 0.68 | 0.999686 |
Target: 5'- uCGGAGCGCUagggcggcCCGgacGACguGGAGCCGGa -3' miRNA: 3'- -GUUUUGCGA--------GGCaauUUG--UCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 33147 | 0.68 | 0.999727 |
Target: 5'- ---cGCGCUCCGccuccgcuuCGGAGCCGc -3' miRNA: 3'- guuuUGCGAGGCaauuu----GUCUCGGUc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 205284 | 0.68 | 0.999752 |
Target: 5'- uGGAGCGCggaCCGgaacgGAugAGGGUCGGa -3' miRNA: 3'- gUUUUGCGa--GGCaa---UUugUCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 1682 | 0.68 | 0.999806 |
Target: 5'- aCGAAGCGCUCCGcaucuACGGcuaccccaucAGCCGc -3' miRNA: 3'- -GUUUUGCGAGGCaauu-UGUC----------UCGGUc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 34662 | 0.67 | 0.999849 |
Target: 5'- ---cGCGUUCUGUcgccucAAACAGGGUCGGg -3' miRNA: 3'- guuuUGCGAGGCAa-----UUUGUCUCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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