Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29350 | 3' | -47.2 | NC_006150.1 | + | 1682 | 0.68 | 0.999806 |
Target: 5'- aCGAAGCGCUCCGcaucuACGGcuaccccaucAGCCGc -3' miRNA: 3'- -GUUUUGCGAGGCaauu-UGUC----------UCGGUc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 3034 | 0.71 | 0.994572 |
Target: 5'- uGGAGCGCUCagcagcaGgaggAGGCAGAGCgCAGg -3' miRNA: 3'- gUUUUGCGAGg------Caa--UUUGUCUCG-GUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 6281 | 0.66 | 0.999985 |
Target: 5'- -----aGCUCUGUUGuuACAGAaCCAGg -3' miRNA: 3'- guuuugCGAGGCAAUu-UGUCUcGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 31985 | 0.67 | 0.999932 |
Target: 5'- aAAAugGCUCCG--AAGC-GAGCgCAGc -3' miRNA: 3'- gUUUugCGAGGCaaUUUGuCUCG-GUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 32115 | 0.66 | 0.999985 |
Target: 5'- aCAuAACGCgacaCGgccu-CAGGGCCAGa -3' miRNA: 3'- -GUuUUGCGag--GCaauuuGUCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 32894 | 0.67 | 0.999884 |
Target: 5'- aCAGAcaGCgGCUCCGaagcggAGGCGGAGCgCGGu -3' miRNA: 3'- -GUUU--UG-CGAGGCaa----UUUGUCUCG-GUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 33147 | 0.68 | 0.999727 |
Target: 5'- ---cGCGCUCCGccuccgcuuCGGAGCCGc -3' miRNA: 3'- guuuUGCGAGGCaauuu----GUCUCGGUc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 34662 | 0.67 | 0.999849 |
Target: 5'- ---cGCGUUCUGUcgccucAAACAGGGUCGGg -3' miRNA: 3'- guuuUGCGAGGCAa-----UUUGUCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 37438 | 0.71 | 0.996027 |
Target: 5'- cCGAAACGCUUCGggGcuuuaucaGACAGGGCUc- -3' miRNA: 3'- -GUUUUGCGAGGCaaU--------UUGUCUCGGuc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 47389 | 0.67 | 0.999908 |
Target: 5'- gAAGGCGCUUCGcgacAAGCGGGuacuaacGCCAGa -3' miRNA: 3'- gUUUUGCGAGGCaa--UUUGUCU-------CGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 54556 | 0.72 | 0.987498 |
Target: 5'- --uGAUGUUgacaaacaaacaCCGUUGGACAGAGUCAGg -3' miRNA: 3'- guuUUGCGA------------GGCAAUUUGUCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 63670 | 0.69 | 0.998614 |
Target: 5'- aGGAACGCUUCGUcAAACGGcauuCCAGa -3' miRNA: 3'- gUUUUGCGAGGCAaUUUGUCuc--GGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 82018 | 0.7 | 0.99799 |
Target: 5'- gGAAGCGCUCgauguCGUUGAGCGuuGCUAGc -3' miRNA: 3'- gUUUUGCGAG-----GCAAUUUGUcuCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 82183 | 0.7 | 0.99799 |
Target: 5'- -cGAGCaGCUCCGUauccucguACAGAGCCu- -3' miRNA: 3'- guUUUG-CGAGGCAauu-----UGUCUCGGuc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 84777 | 0.66 | 0.999962 |
Target: 5'- ---cACGUaCCGcaGAugAGGGCCAGg -3' miRNA: 3'- guuuUGCGaGGCaaUUugUCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 87745 | 0.66 | 0.999977 |
Target: 5'- --uGACGCUgCGguuuuuacaggaaagGGGCGGAGUCAGa -3' miRNA: 3'- guuUUGCGAgGCaa-------------UUUGUCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 87934 | 0.67 | 0.999911 |
Target: 5'- --cAGC-CUCgGUggggGGGCGGAGCCGGu -3' miRNA: 3'- guuUUGcGAGgCAa---UUUGUCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 88701 | 0.68 | 0.999686 |
Target: 5'- uCGGAGCGCUagggcggcCCGgacGACguGGAGCCGGa -3' miRNA: 3'- -GUUUUGCGA--------GGCaauUUG--UCUCGGUC- -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 104235 | 0.66 | 0.999972 |
Target: 5'- aAAGACGC-CCGUUAAGaaaAGCCGc -3' miRNA: 3'- gUUUUGCGaGGCAAUUUgucUCGGUc -5' |
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29350 | 3' | -47.2 | NC_006150.1 | + | 126296 | 0.68 | 0.999686 |
Target: 5'- gAAGGCGCagaCGUUGccgcacaucccaGACGGAGCCGa -3' miRNA: 3'- gUUUUGCGag-GCAAU------------UUGUCUCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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