miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29350 3' -47.2 NC_006150.1 + 204677 1.09 0.028361
Target:  5'- uCAAAACGCUCCGUUAAACAGAGCCAGu -3'
miRNA:   3'- -GUUUUGCGAGGCAAUUUGUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 47389 0.67 0.999908
Target:  5'- gAAGGCGCUUCGcgacAAGCGGGuacuaacGCCAGa -3'
miRNA:   3'- gUUUUGCGAGGCaa--UUUGUCU-------CGGUC- -5'
29350 3' -47.2 NC_006150.1 + 87934 0.67 0.999911
Target:  5'- --cAGC-CUCgGUggggGGGCGGAGCCGGu -3'
miRNA:   3'- guuUUGcGAGgCAa---UUUGUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 31985 0.67 0.999932
Target:  5'- aAAAugGCUCCG--AAGC-GAGCgCAGc -3'
miRNA:   3'- gUUUugCGAGGCaaUUUGuCUCG-GUC- -5'
29350 3' -47.2 NC_006150.1 + 84777 0.66 0.999962
Target:  5'- ---cACGUaCCGcaGAugAGGGCCAGg -3'
miRNA:   3'- guuuUGCGaGGCaaUUugUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 197276 0.66 0.999962
Target:  5'- aAGAGCGCgaugauagCCGUau-ACAcAGCCAGg -3'
miRNA:   3'- gUUUUGCGa-------GGCAauuUGUcUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 87745 0.66 0.999977
Target:  5'- --uGACGCUgCGguuuuuacaggaaagGGGCGGAGUCAGa -3'
miRNA:   3'- guuUUGCGAgGCaa-------------UUUGUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 147406 0.66 0.999979
Target:  5'- gGAAACGUUCCugcu-GCAguucuGAGCCAGc -3'
miRNA:   3'- gUUUUGCGAGGcaauuUGU-----CUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 32115 0.66 0.999985
Target:  5'- aCAuAACGCgacaCGgccu-CAGGGCCAGa -3'
miRNA:   3'- -GUuUUGCGag--GCaauuuGUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 32894 0.67 0.999884
Target:  5'- aCAGAcaGCgGCUCCGaagcggAGGCGGAGCgCGGu -3'
miRNA:   3'- -GUUU--UG-CGAGGCaa----UUUGUCUCG-GUC- -5'
29350 3' -47.2 NC_006150.1 + 34662 0.67 0.999849
Target:  5'- ---cGCGUUCUGUcgccucAAACAGGGUCGGg -3'
miRNA:   3'- guuuUGCGAGGCAa-----UUUGUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 1682 0.68 0.999806
Target:  5'- aCGAAGCGCUCCGcaucuACGGcuaccccaucAGCCGc -3'
miRNA:   3'- -GUUUUGCGAGGCaauu-UGUC----------UCGGUc -5'
29350 3' -47.2 NC_006150.1 + 54556 0.72 0.987498
Target:  5'- --uGAUGUUgacaaacaaacaCCGUUGGACAGAGUCAGg -3'
miRNA:   3'- guuUUGCGA------------GGCAAUUUGUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 128459 0.71 0.993698
Target:  5'- aGGAACGCcUCGUUAcAGCAGuguGCCAGu -3'
miRNA:   3'- gUUUUGCGaGGCAAU-UUGUCu--CGGUC- -5'
29350 3' -47.2 NC_006150.1 + 193544 0.71 0.996027
Target:  5'- -uGAAgGCUCCGUagGAACAGAuaCAGa -3'
miRNA:   3'- guUUUgCGAGGCAa-UUUGUCUcgGUC- -5'
29350 3' -47.2 NC_006150.1 + 82018 0.7 0.99799
Target:  5'- gGAAGCGCUCgauguCGUUGAGCGuuGCUAGc -3'
miRNA:   3'- gUUUUGCGAG-----GCAAUUUGUcuCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 82183 0.7 0.99799
Target:  5'- -cGAGCaGCUCCGUauccucguACAGAGCCu- -3'
miRNA:   3'- guUUUG-CGAGGCAauu-----UGUCUCGGuc -5'
29350 3' -47.2 NC_006150.1 + 191349 0.69 0.999239
Target:  5'- uCAAGAUGU--CGUgGAGCAGAGCUAGu -3'
miRNA:   3'- -GUUUUGCGagGCAaUUUGUCUCGGUC- -5'
29350 3' -47.2 NC_006150.1 + 133368 0.69 0.999357
Target:  5'- --uAACGCUCCGcauuccccuGCGGGGCCu- -3'
miRNA:   3'- guuUUGCGAGGCaauu-----UGUCUCGGuc -5'
29350 3' -47.2 NC_006150.1 + 205284 0.68 0.999752
Target:  5'- uGGAGCGCggaCCGgaacgGAugAGGGUCGGa -3'
miRNA:   3'- gUUUUGCGa--GGCaa---UUugUCUCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.