miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29352 5' -51.8 NC_006150.1 + 107457 0.67 0.991058
Target:  5'- -gUCUGuacAACCAcaagauggcgGUCCAACGCCGCCc- -3'
miRNA:   3'- cgAGGC---UUGGU----------UAGGUUGUGGUGGua -5'
29352 5' -51.8 NC_006150.1 + 109101 0.74 0.792902
Target:  5'- gGCcgCCGAgaGCCAAcgCCcGCACCACCAUc -3'
miRNA:   3'- -CGa-GGCU--UGGUUa-GGuUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 112685 0.7 0.950575
Target:  5'- --aCCGAccgACCcAUCCAAcCACCGCCGa -3'
miRNA:   3'- cgaGGCU---UGGuUAGGUU-GUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 113878 0.72 0.896671
Target:  5'- uCUCCGu-CCGacuGUCgGACGCCACCAUc -3'
miRNA:   3'- cGAGGCuuGGU---UAGgUUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 116959 0.66 0.994098
Target:  5'- cGCUCagcuGGACCcggcCCAACGCCACgGg -3'
miRNA:   3'- -CGAGg---CUUGGuua-GGUUGUGGUGgUa -5'
29352 5' -51.8 NC_006150.1 + 125256 0.71 0.921149
Target:  5'- uGCUUuuUGAGCCGAUCCcguucCACCACCu- -3'
miRNA:   3'- -CGAG--GCUUGGUUAGGuu---GUGGUGGua -5'
29352 5' -51.8 NC_006150.1 + 127445 0.66 0.994098
Target:  5'- uGCUCaCcAGCCAAgccCCGGCuCCACCGa -3'
miRNA:   3'- -CGAG-GcUUGGUUa--GGUUGuGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 128846 0.66 0.994098
Target:  5'- -aUCCGcuucGCgGAUCCAggaGCGCUACCAa -3'
miRNA:   3'- cgAGGCu---UGgUUAGGU---UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 131807 0.71 0.921149
Target:  5'- uGCgCCGAGCCGuaCCGguuucuugaaACACCACCAc -3'
miRNA:   3'- -CGaGGCUUGGUuaGGU----------UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 136179 0.66 0.996244
Target:  5'- cGCUCUucACCGucagCUGugGCCGCCAg -3'
miRNA:   3'- -CGAGGcuUGGUua--GGUugUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 148642 0.7 0.950575
Target:  5'- aCUCCGcACCg--CCAGCACCAuCCGc -3'
miRNA:   3'- cGAGGCuUGGuuaGGUUGUGGU-GGUa -5'
29352 5' -51.8 NC_006150.1 + 149036 0.69 0.968618
Target:  5'- aCUCUcauGCCAGUCCuGCuGCCACCAg -3'
miRNA:   3'- cGAGGcu-UGGUUAGGuUG-UGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 150067 0.66 0.995615
Target:  5'- gGUUCgCGGccaGCCAggCUcGCACCGCCAc -3'
miRNA:   3'- -CGAG-GCU---UGGUuaGGuUGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 152308 0.66 0.994902
Target:  5'- cGC-CaCGAgcGCCAAggCCAgcaGCACCACCGc -3'
miRNA:   3'- -CGaG-GCU--UGGUUa-GGU---UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 153293 0.68 0.979221
Target:  5'- uGCgcgCC-AGCCA--CCAACACCACCu- -3'
miRNA:   3'- -CGa--GGcUUGGUuaGGUUGUGGUGGua -5'
29352 5' -51.8 NC_006150.1 + 153840 0.66 0.995547
Target:  5'- ---aCGAACCAcuccucacauaaaGUCCAaaACAUCACCAg -3'
miRNA:   3'- cgagGCUUGGU-------------UAGGU--UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 157651 0.66 0.995615
Target:  5'- -gUCCaAGCCcaaGAUcCCAGCACCACCc- -3'
miRNA:   3'- cgAGGcUUGG---UUA-GGUUGUGGUGGua -5'
29352 5' -51.8 NC_006150.1 + 160665 0.67 0.991058
Target:  5'- -aUCUGAGCCAA-CUGGCuguCCGCCAg -3'
miRNA:   3'- cgAGGCUUGGUUaGGUUGu--GGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 167523 0.69 0.965455
Target:  5'- uUUCCGAAgCAAUCCAGgCACCcgguauCCAg -3'
miRNA:   3'- cGAGGCUUgGUUAGGUU-GUGGu-----GGUa -5'
29352 5' -51.8 NC_006150.1 + 169178 0.66 0.996244
Target:  5'- --aCCGAACCAcuagcaCCAgcccuaggcacACGCCGCCAa -3'
miRNA:   3'- cgaGGCUUGGUua----GGU-----------UGUGGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.