miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29352 5' -51.8 NC_006150.1 + 594 0.66 0.992184
Target:  5'- cGCUCgCG-GCCAcaCCGucuACACCGCCGg -3'
miRNA:   3'- -CGAG-GCuUGGUuaGGU---UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 1285 0.71 0.926662
Target:  5'- aGCaccgCCGAACacgAAUCCGGCACCuGCCGa -3'
miRNA:   3'- -CGa---GGCUUGg--UUAGGUUGUGG-UGGUa -5'
29352 5' -51.8 NC_006150.1 + 31456 0.67 0.986901
Target:  5'- aUUUCGAACCGAgcgCCAACgacgcagaACUACCAg -3'
miRNA:   3'- cGAGGCUUGGUUa--GGUUG--------UGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 37200 0.7 0.936954
Target:  5'- aGCcCCGAagcguuucgGCCAAuUUCAGCAUCACCGUg -3'
miRNA:   3'- -CGaGGCU---------UGGUU-AGGUUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 38327 0.71 0.93193
Target:  5'- cGCUCCuGACCca-CCAGCGCCACa-- -3'
miRNA:   3'- -CGAGGcUUGGuuaGGUUGUGGUGgua -5'
29352 5' -51.8 NC_006150.1 + 46106 0.7 0.941735
Target:  5'- cGC-CCGGACUuguuuUCCGaugaGCACCGCCAc -3'
miRNA:   3'- -CGaGGCUUGGuu---AGGU----UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 58544 0.67 0.988425
Target:  5'- cCUCCGuACCA--CCAuCACCACCc- -3'
miRNA:   3'- cGAGGCuUGGUuaGGUuGUGGUGGua -5'
29352 5' -51.8 NC_006150.1 + 58846 0.67 0.989808
Target:  5'- cGCUCCGcAAUgAAUUUAugGCgCACCAa -3'
miRNA:   3'- -CGAGGC-UUGgUUAGGUugUG-GUGGUa -5'
29352 5' -51.8 NC_006150.1 + 64469 0.78 0.602517
Target:  5'- cCUCaCGAGCCGcagcUCCAACAUCACCAUg -3'
miRNA:   3'- cGAG-GCUUGGUu---AGGUUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 64473 0.69 0.961724
Target:  5'- aGCUCCGAcauuucuuguGCCAAguuuacagcuuguUCCAGuCGCCGCUg- -3'
miRNA:   3'- -CGAGGCU----------UGGUU-------------AGGUU-GUGGUGGua -5'
29352 5' -51.8 NC_006150.1 + 66730 0.67 0.986901
Target:  5'- cCUCCGAuuCCAGggaaCGACAUUACCGUa -3'
miRNA:   3'- cGAGGCUu-GGUUag--GUUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 81721 0.68 0.983395
Target:  5'- aGCUCCGuga-GAUCCuGCuCCACCGUu -3'
miRNA:   3'- -CGAGGCuuggUUAGGuUGuGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 85654 0.66 0.993195
Target:  5'- --aCCGGccGCCGuacaCAGCGCCGCCAg -3'
miRNA:   3'- cgaGGCU--UGGUuag-GUUGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 88083 0.68 0.976864
Target:  5'- uGC-CCGGACgGcgCCGcggacuGCGCCACCGa -3'
miRNA:   3'- -CGaGGCUUGgUuaGGU------UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 88763 0.66 0.993195
Target:  5'- cGC-CUGucCCGAUCCAGCACUGCg-- -3'
miRNA:   3'- -CGaGGCuuGGUUAGGUUGUGGUGgua -5'
29352 5' -51.8 NC_006150.1 + 88998 0.67 0.989808
Target:  5'- -aUCCGAaacGCC-GUCCAACGuCCACgGUg -3'
miRNA:   3'- cgAGGCU---UGGuUAGGUUGU-GGUGgUA- -5'
29352 5' -51.8 NC_006150.1 + 91309 0.66 0.993195
Target:  5'- cGUUCaGGAUCAGUUCA--GCCACCAUa -3'
miRNA:   3'- -CGAGgCUUGGUUAGGUugUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 96166 0.67 0.988425
Target:  5'- aCUCUGAucaCAAUCCAuguCCACCAg -3'
miRNA:   3'- cGAGGCUug-GUUAGGUuguGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 106539 0.69 0.965455
Target:  5'- aGCggCCGAACgAGUCaCAGCACaGCCGa -3'
miRNA:   3'- -CGa-GGCUUGgUUAG-GUUGUGgUGGUa -5'
29352 5' -51.8 NC_006150.1 + 106698 0.66 0.994098
Target:  5'- cGCUCaucgGGGCCAGUCgGcACGCgACCGa -3'
miRNA:   3'- -CGAGg---CUUGGUUAGgU-UGUGgUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.