miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29352 5' -51.8 NC_006150.1 + 204964 1.09 0.009629
Target:  5'- cGCUCCGAACCAAUCCAACACCACCAUg -3'
miRNA:   3'- -CGAGGCUUGGUUAGGUUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 64469 0.78 0.602517
Target:  5'- cCUCaCGAGCCGcagcUCCAACAUCACCAUg -3'
miRNA:   3'- cGAG-GCUUGGUu---AGGUUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 181098 0.75 0.755118
Target:  5'- -gUCCGAGCgAcgCCGACGCCGCUGUu -3'
miRNA:   3'- cgAGGCUUGgUuaGGUUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 109101 0.74 0.792902
Target:  5'- gGCcgCCGAgaGCCAAcgCCcGCACCACCAUc -3'
miRNA:   3'- -CGa-GGCU--UGGUUa-GGuUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 113878 0.72 0.896671
Target:  5'- uCUCCGu-CCGacuGUCgGACGCCACCAUc -3'
miRNA:   3'- cGAGGCuuGGU---UAGgUUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 131807 0.71 0.921149
Target:  5'- uGCgCCGAGCCGuaCCGguuucuugaaACACCACCAc -3'
miRNA:   3'- -CGaGGCUUGGUuaGGU----------UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 125256 0.71 0.921149
Target:  5'- uGCUUuuUGAGCCGAUCCcguucCACCACCu- -3'
miRNA:   3'- -CGAG--GCUUGGUUAGGuu---GUGGUGGua -5'
29352 5' -51.8 NC_006150.1 + 184853 0.71 0.921149
Target:  5'- -gUCCGAGCUGcagCgCAACGCCGCCAa -3'
miRNA:   3'- cgAGGCUUGGUua-G-GUUGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 1285 0.71 0.926662
Target:  5'- aGCaccgCCGAACacgAAUCCGGCACCuGCCGa -3'
miRNA:   3'- -CGa---GGCUUGg--UUAGGUUGUGG-UGGUa -5'
29352 5' -51.8 NC_006150.1 + 38327 0.71 0.93193
Target:  5'- cGCUCCuGACCca-CCAGCGCCACa-- -3'
miRNA:   3'- -CGAGGcUUGGuuaGGUUGUGGUGgua -5'
29352 5' -51.8 NC_006150.1 + 170297 0.7 0.935473
Target:  5'- cGCUCCGAgucaaagccugcacGCCGGUaUCGGCGCCGCgAg -3'
miRNA:   3'- -CGAGGCU--------------UGGUUA-GGUUGUGGUGgUa -5'
29352 5' -51.8 NC_006150.1 + 37200 0.7 0.936954
Target:  5'- aGCcCCGAagcguuucgGCCAAuUUCAGCAUCACCGUg -3'
miRNA:   3'- -CGaGGCU---------UGGUU-AGGUUGUGGUGGUA- -5'
29352 5' -51.8 NC_006150.1 + 46106 0.7 0.941735
Target:  5'- cGC-CCGGACUuguuuUCCGaugaGCACCGCCAc -3'
miRNA:   3'- -CGaGGCUUGGuu---AGGU----UGUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 148642 0.7 0.950575
Target:  5'- aCUCCGcACCg--CCAGCACCAuCCGc -3'
miRNA:   3'- cGAGGCuUGGuuaGGUUGUGGU-GGUa -5'
29352 5' -51.8 NC_006150.1 + 112685 0.7 0.950575
Target:  5'- --aCCGAccgACCcAUCCAAcCACCGCCGa -3'
miRNA:   3'- cgaGGCU---UGGuUAGGUU-GUGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 64473 0.69 0.961724
Target:  5'- aGCUCCGAcauuucuuguGCCAAguuuacagcuuguUCCAGuCGCCGCUg- -3'
miRNA:   3'- -CGAGGCU----------UGGUU-------------AGGUU-GUGGUGGua -5'
29352 5' -51.8 NC_006150.1 + 106539 0.69 0.965455
Target:  5'- aGCggCCGAACgAGUCaCAGCACaGCCGa -3'
miRNA:   3'- -CGa-GGCUUGgUUAG-GUUGUGgUGGUa -5'
29352 5' -51.8 NC_006150.1 + 167523 0.69 0.965455
Target:  5'- uUUCCGAAgCAAUCCAGgCACCcgguauCCAg -3'
miRNA:   3'- cGAGGCUUgGUUAGGUU-GUGGu-----GGUa -5'
29352 5' -51.8 NC_006150.1 + 149036 0.69 0.968618
Target:  5'- aCUCUcauGCCAGUCCuGCuGCCACCAg -3'
miRNA:   3'- cGAGGcu-UGGUUAGGuUG-UGGUGGUa -5'
29352 5' -51.8 NC_006150.1 + 88083 0.68 0.976864
Target:  5'- uGC-CCGGACgGcgCCGcggacuGCGCCACCGa -3'
miRNA:   3'- -CGaGGCUUGgUuaGGU------UGUGGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.