miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29355 5' -57.6 NC_006150.1 + 74021 0.66 0.913283
Target:  5'- -aGCGuCAGCCGUGGUCGgGGGguUGCg -3'
miRNA:   3'- acUGUuGUCGGUGCCAGC-CCCguGUG- -5'
29355 5' -57.6 NC_006150.1 + 210666 0.66 0.913283
Target:  5'- aGuCAuGCGGCgCGgGGUCGGacaccGGCACACc -3'
miRNA:   3'- aCuGU-UGUCG-GUgCCAGCC-----CCGUGUG- -5'
29355 5' -57.6 NC_006150.1 + 114822 0.66 0.907446
Target:  5'- gGuuGAUuuCCACGGcgagCGGGGCugGCa -3'
miRNA:   3'- aCugUUGucGGUGCCa---GCCCCGugUG- -5'
29355 5' -57.6 NC_006150.1 + 198407 0.66 0.907446
Target:  5'- gGAUuuCAGCCuaggACGGUgGuGGGC-CGCg -3'
miRNA:   3'- aCUGuuGUCGG----UGCCAgC-CCCGuGUG- -5'
29355 5' -57.6 NC_006150.1 + 124642 0.66 0.89511
Target:  5'- -aGCAagGCGGCgGCGG-C-GGGCGCACu -3'
miRNA:   3'- acUGU--UGUCGgUGCCaGcCCCGUGUG- -5'
29355 5' -57.6 NC_006150.1 + 315 0.66 0.89511
Target:  5'- gGAgGACGGCUGCc--CGGGGUugGCg -3'
miRNA:   3'- aCUgUUGUCGGUGccaGCCCCGugUG- -5'
29355 5' -57.6 NC_006150.1 + 214731 0.66 0.888616
Target:  5'- cUGuC-ACAcUCACGGcCGGGGCGCAUc -3'
miRNA:   3'- -ACuGuUGUcGGUGCCaGCCCCGUGUG- -5'
29355 5' -57.6 NC_006150.1 + 183507 0.67 0.874993
Target:  5'- -uGCGugGGCUcCGGUgCGGGGUGCGa -3'
miRNA:   3'- acUGUugUCGGuGCCA-GCCCCGUGUg -5'
29355 5' -57.6 NC_006150.1 + 32896 0.67 0.874993
Target:  5'- aGACAGCGGCUccgaaGCGGaggCGGaGCGCGg -3'
miRNA:   3'- aCUGUUGUCGG-----UGCCa--GCCcCGUGUg -5'
29355 5' -57.6 NC_006150.1 + 172643 0.67 0.87429
Target:  5'- aUGACGGCAGCCucucCGGUgucacauUGGGGauuuGCAUc -3'
miRNA:   3'- -ACUGUUGUCGGu---GCCA-------GCCCCg---UGUG- -5'
29355 5' -57.6 NC_006150.1 + 117058 0.67 0.867872
Target:  5'- cGGCGuccAUGGCCGCcaugCGGGGCACGu -3'
miRNA:   3'- aCUGU---UGUCGGUGcca-GCCCCGUGUg -5'
29355 5' -57.6 NC_006150.1 + 106928 0.67 0.860552
Target:  5'- aUGACAgugaucgcAUGGCUugGGagCGcGGGUACGCg -3'
miRNA:   3'- -ACUGU--------UGUCGGugCCa-GC-CCCGUGUG- -5'
29355 5' -57.6 NC_006150.1 + 58559 0.67 0.859065
Target:  5'- gGGCAAaaagugccauuGCCACGGUCguuGGGGCAaauuuCGCu -3'
miRNA:   3'- aCUGUUgu---------CGGUGCCAG---CCCCGU-----GUG- -5'
29355 5' -57.6 NC_006150.1 + 69519 0.67 0.853038
Target:  5'- cGAgAACugcGCCACGcucuGUCGGGGuUGCACc -3'
miRNA:   3'- aCUgUUGu--CGGUGC----CAGCCCC-GUGUG- -5'
29355 5' -57.6 NC_006150.1 + 149311 0.68 0.83745
Target:  5'- gUGGCGGCAGCgGCGGUagcagcaguacUGGuGGCAgCAg -3'
miRNA:   3'- -ACUGUUGUCGgUGCCA-----------GCC-CCGU-GUg -5'
29355 5' -57.6 NC_006150.1 + 173665 0.68 0.821159
Target:  5'- cGACGGCuuGCCGCGGcaugcaaGGGGaACACc -3'
miRNA:   3'- aCUGUUGu-CGGUGCCag-----CCCCgUGUG- -5'
29355 5' -57.6 NC_006150.1 + 206168 0.68 0.812767
Target:  5'- gUGGCAAauacgaaCC-CGGUCGGGGUACGg -3'
miRNA:   3'- -ACUGUUguc----GGuGCCAGCCCCGUGUg -5'
29355 5' -57.6 NC_006150.1 + 74963 0.69 0.786695
Target:  5'- cUGuuGACGGUCGCaGUagCGGGGUGCGCa -3'
miRNA:   3'- -ACugUUGUCGGUGcCA--GCCCCGUGUG- -5'
29355 5' -57.6 NC_006150.1 + 128898 0.69 0.786695
Target:  5'- aGGCGGCAGCCGCcGagGGGGgagaaaCAUACg -3'
miRNA:   3'- aCUGUUGUCGGUGcCagCCCC------GUGUG- -5'
29355 5' -57.6 NC_006150.1 + 87634 0.69 0.777732
Target:  5'- --cCAACGGUCugGGuuaUCGGGGCuGCAUu -3'
miRNA:   3'- acuGUUGUCGGugCC---AGCCCCG-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.