miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29356 3' -60.5 NC_006150.1 + 137895 0.66 0.814365
Target:  5'- aCACu----GUGUaaccuacuucaGCCGCCAGCGCCGa -3'
miRNA:   3'- -GUGuagcuCGCG-----------UGGCGGUCGCGGCa -5'
29356 3' -60.5 NC_006150.1 + 70289 0.66 0.814365
Target:  5'- aGCGcUCGuggcGGCGCugCGCCGucaCGCCGg -3'
miRNA:   3'- gUGU-AGC----UCGCGugGCGGUc--GCGGCa -5'
29356 3' -60.5 NC_006150.1 + 181233 0.66 0.814365
Target:  5'- cCAC--UGAGCGCGCUGUCguuguugucguGGUGCCGa -3'
miRNA:   3'- -GUGuaGCUCGCGUGGCGG-----------UCGCGGCa -5'
29356 3' -60.5 NC_006150.1 + 204978 0.66 0.805177
Target:  5'- aGCucccuUCGAGCGCGaagagcgUCGUCAGCGCuuCGUa -3'
miRNA:   3'- gUGu----AGCUCGCGU-------GGCGGUCGCG--GCA- -5'
29356 3' -60.5 NC_006150.1 + 603 0.66 0.797531
Target:  5'- cCACAcCGucuaCACCGCCGGCGCCc- -3'
miRNA:   3'- -GUGUaGCucgcGUGGCGGUCGCGGca -5'
29356 3' -60.5 NC_006150.1 + 87828 0.66 0.780157
Target:  5'- aGC-UCGguGGCGCAguCCG-CGGCGCCGUc -3'
miRNA:   3'- gUGuAGC--UCGCGU--GGCgGUCGCGGCA- -5'
29356 3' -60.5 NC_006150.1 + 218232 0.66 0.771286
Target:  5'- --aGUCacAGCcCGCCGUCGGCGCCGa -3'
miRNA:   3'- gugUAGc-UCGcGUGGCGGUCGCGGCa -5'
29356 3' -60.5 NC_006150.1 + 108168 0.66 0.771286
Target:  5'- ----aCGAGaagGCACCG-CGGCGCCGg -3'
miRNA:   3'- guguaGCUCg--CGUGGCgGUCGCGGCa -5'
29356 3' -60.5 NC_006150.1 + 70962 0.67 0.762303
Target:  5'- uCGCggCGAGUGCAgCCGCUuGCgGCUGUu -3'
miRNA:   3'- -GUGuaGCUCGCGU-GGCGGuCG-CGGCA- -5'
29356 3' -60.5 NC_006150.1 + 70038 0.67 0.747715
Target:  5'- gGCGUgaCGGcGCaGCGCCGCCAcgagcgcuuccagcuGCGCCGa -3'
miRNA:   3'- gUGUA--GCU-CG-CGUGGCGGU---------------CGCGGCa -5'
29356 3' -60.5 NC_006150.1 + 135813 0.67 0.744031
Target:  5'- -uCAUCGAGaCGCACuCGCCuGGCaCCGc -3'
miRNA:   3'- guGUAGCUC-GCGUG-GCGG-UCGcGGCa -5'
29356 3' -60.5 NC_006150.1 + 45539 0.67 0.744031
Target:  5'- uGCGUCGAGUGCACC-CaGGUGCgGc -3'
miRNA:   3'- gUGUAGCUCGCGUGGcGgUCGCGgCa -5'
29356 3' -60.5 NC_006150.1 + 124895 0.67 0.725404
Target:  5'- aCAUGUCcAGUGCGcCCGCCGcCGCCGc -3'
miRNA:   3'- -GUGUAGcUCGCGU-GGCGGUcGCGGCa -5'
29356 3' -60.5 NC_006150.1 + 125712 0.67 0.715978
Target:  5'- aAgGUCG-GCGCgACCGUCAG-GCCGg -3'
miRNA:   3'- gUgUAGCuCGCG-UGGCGGUCgCGGCa -5'
29356 3' -60.5 NC_006150.1 + 88509 0.67 0.715978
Target:  5'- ----cCGAGCGCAcgcuccgccccCCGCCAGgGCUGc -3'
miRNA:   3'- guguaGCUCGCGU-----------GGCGGUCgCGGCa -5'
29356 3' -60.5 NC_006150.1 + 214878 0.67 0.715978
Target:  5'- cUACggCGGGUGCuGCCGCCucGCGCaCGg -3'
miRNA:   3'- -GUGuaGCUCGCG-UGGCGGu-CGCG-GCa -5'
29356 3' -60.5 NC_006150.1 + 107267 0.68 0.706487
Target:  5'- uGCGgcaGAuUGCGCCGCCGGCGCUu- -3'
miRNA:   3'- gUGUag-CUcGCGUGGCGGUCGCGGca -5'
29356 3' -60.5 NC_006150.1 + 88450 0.68 0.69694
Target:  5'- cCACGUCGucCGgGCCGCCcuAGCGCUc- -3'
miRNA:   3'- -GUGUAGCucGCgUGGCGG--UCGCGGca -5'
29356 3' -60.5 NC_006150.1 + 71866 0.68 0.681564
Target:  5'- -uCAUCGucaggauccuccccGUGUACCGCCcGCGCCGa -3'
miRNA:   3'- guGUAGCu-------------CGCGUGGCGGuCGCGGCa -5'
29356 3' -60.5 NC_006150.1 + 71029 0.68 0.668032
Target:  5'- gCGCAagGGGUGCGCuCGCUGGCGCa-- -3'
miRNA:   3'- -GUGUagCUCGCGUG-GCGGUCGCGgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.