miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29359 3' -54.6 NC_006150.1 + 159890 0.66 0.9824
Target:  5'- --aGGAAgGACAUGgCUCUgcaGCACGCUg -3'
miRNA:   3'- gagCCUUgUUGUACaGGGG---CGUGCGG- -5'
29359 3' -54.6 NC_006150.1 + 102230 0.66 0.9824
Target:  5'- cCUCGGAcacGCGACuuuccagGUCUUCGCaguACGUCu -3'
miRNA:   3'- -GAGCCU---UGUUGua-----CAGGGGCG---UGCGG- -5'
29359 3' -54.6 NC_006150.1 + 220023 0.66 0.980386
Target:  5'- cCUCGGAcguuccacccGCGGCcacgccagGUCCugCCGC-CGCCg -3'
miRNA:   3'- -GAGCCU----------UGUUGua------CAGG--GGCGuGCGG- -5'
29359 3' -54.6 NC_006150.1 + 142717 0.66 0.980386
Target:  5'- -gUGGAcuACGGCAUcacgUCCCGCACGgCg -3'
miRNA:   3'- gaGCCU--UGUUGUAca--GGGGCGUGCgG- -5'
29359 3' -54.6 NC_006150.1 + 74538 0.66 0.980386
Target:  5'- gUCGaGggUGAUGUGguaaUCgUCGCGCGCCg -3'
miRNA:   3'- gAGC-CuuGUUGUAC----AGgGGCGUGCGG- -5'
29359 3' -54.6 NC_006150.1 + 103688 0.66 0.978206
Target:  5'- -aCGGAGCGc---GUCCUCGCAgGCa -3'
miRNA:   3'- gaGCCUUGUuguaCAGGGGCGUgCGg -5'
29359 3' -54.6 NC_006150.1 + 117313 0.66 0.975852
Target:  5'- uUCGGA----CGUG-CCCCGCAUggcgGCCa -3'
miRNA:   3'- gAGCCUuguuGUACaGGGGCGUG----CGG- -5'
29359 3' -54.6 NC_006150.1 + 48095 0.66 0.973317
Target:  5'- ---cGAACGACAUGUCaaaagCUCGCAUGUCc -3'
miRNA:   3'- gagcCUUGUUGUACAG-----GGGCGUGCGG- -5'
29359 3' -54.6 NC_006150.1 + 141134 0.66 0.973317
Target:  5'- -cCGcGAGCGGCGUGUgCCCUGCAUcauuuguguggGCUc -3'
miRNA:   3'- gaGC-CUUGUUGUACA-GGGGCGUG-----------CGG- -5'
29359 3' -54.6 NC_006150.1 + 64320 0.66 0.973317
Target:  5'- -aCGGGACAAgc-GUCCUCGUcgaACGCUa -3'
miRNA:   3'- gaGCCUUGUUguaCAGGGGCG---UGCGG- -5'
29359 3' -54.6 NC_006150.1 + 82934 0.66 0.973053
Target:  5'- gCUCGGGAuCAACAUccagguugucagaGUCCaaaGC-CGCCa -3'
miRNA:   3'- -GAGCCUU-GUUGUA-------------CAGGgg-CGuGCGG- -5'
29359 3' -54.6 NC_006150.1 + 150357 0.67 0.967679
Target:  5'- gCUCGucaGAGCGAUacuGUGUaCCCGC-CGCCc -3'
miRNA:   3'- -GAGC---CUUGUUG---UACAgGGGCGuGCGG- -5'
29359 3' -54.6 NC_006150.1 + 3803 0.67 0.967377
Target:  5'- -cCGcAACAACAUGUgCCUGCACuguaaccgcucgaGCCu -3'
miRNA:   3'- gaGCcUUGUUGUACAgGGGCGUG-------------CGG- -5'
29359 3' -54.6 NC_006150.1 + 221400 0.67 0.961245
Target:  5'- cCUgGGGAgGAaagcugccugcCGUacGUCuCCCGCACGCCc -3'
miRNA:   3'- -GAgCCUUgUU-----------GUA--CAG-GGGCGUGCGG- -5'
29359 3' -54.6 NC_006150.1 + 84628 0.68 0.950014
Target:  5'- -aCGuauGGCAACAUGUCCcgCCGCAaGCCc -3'
miRNA:   3'- gaGCc--UUGUUGUACAGG--GGCGUgCGG- -5'
29359 3' -54.6 NC_006150.1 + 13352 0.68 0.941429
Target:  5'- uCUCaGggUAGCuUGUCgaUCCGCGCGCa -3'
miRNA:   3'- -GAGcCuuGUUGuACAG--GGGCGUGCGg -5'
29359 3' -54.6 NC_006150.1 + 117008 0.68 0.941429
Target:  5'- uCUUGGuucuGCAGuuCGUG-CCCgaGCACGCCa -3'
miRNA:   3'- -GAGCCu---UGUU--GUACaGGGg-CGUGCGG- -5'
29359 3' -54.6 NC_006150.1 + 142872 0.68 0.931944
Target:  5'- uCUgGuGAugAACGUGaaCCCGCuGCGCCu -3'
miRNA:   3'- -GAgC-CUugUUGUACagGGGCG-UGCGG- -5'
29359 3' -54.6 NC_006150.1 + 204309 0.69 0.921547
Target:  5'- gCUCGGAGCucCAUcUUCCCaucggGUGCGCCa -3'
miRNA:   3'- -GAGCCUUGuuGUAcAGGGG-----CGUGCGG- -5'
29359 3' -54.6 NC_006150.1 + 86161 0.69 0.91024
Target:  5'- -aCGGAaauguGCAcCGUGcgCCUgGCGCGCCg -3'
miRNA:   3'- gaGCCU-----UGUuGUACa-GGGgCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.