miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29362 3' -56 NC_006150.1 + 856 0.67 0.882798
Target:  5'- gUGCGCcgGGCGCcGGC-GGUGUagACGGu -3'
miRNA:   3'- gACGCGa-CCGCGuCCGuUUACG--UGUC- -5'
29362 3' -56 NC_006150.1 + 1415 0.71 0.708527
Target:  5'- -gGUGUUGGCGCAGGCGccgggAGUGUgugACAu -3'
miRNA:   3'- gaCGCGACCGCGUCCGU-----UUACG---UGUc -5'
29362 3' -56 NC_006150.1 + 1485 0.66 0.936072
Target:  5'- -aGCGCU-GUGCGGGUAGGaagaugGUGCAGg -3'
miRNA:   3'- gaCGCGAcCGCGUCCGUUUa-----CGUGUC- -5'
29362 3' -56 NC_006150.1 + 1625 0.71 0.688529
Target:  5'- gCUGCGCagggcgugGGCGUAGGCAGu--CACGGc -3'
miRNA:   3'- -GACGCGa-------CCGCGUCCGUUuacGUGUC- -5'
29362 3' -56 NC_006150.1 + 1785 0.67 0.902645
Target:  5'- --uUGCUGGUGCcucuGGgGAGUGCACGc -3'
miRNA:   3'- gacGCGACCGCGu---CCgUUUACGUGUc -5'
29362 3' -56 NC_006150.1 + 8319 0.73 0.601268
Target:  5'- aCUGCGCUGGCccaucuuuuuaaucgGUA-GCAGAUGCAgCAGa -3'
miRNA:   3'- -GACGCGACCG---------------CGUcCGUUUACGU-GUC- -5'
29362 3' -56 NC_006150.1 + 31704 0.66 0.914728
Target:  5'- uCUGCGUcguUGGCGCucGGUucgAAAUGCugAa -3'
miRNA:   3'- -GACGCG---ACCGCGu-CCG---UUUACGugUc -5'
29362 3' -56 NC_006150.1 + 41213 0.72 0.658205
Target:  5'- aUGUGCgUGuG-GCAGGCAGAUGCACuGa -3'
miRNA:   3'- gACGCG-AC-CgCGUCCGUUUACGUGuC- -5'
29362 3' -56 NC_006150.1 + 63342 0.76 0.451456
Target:  5'- gUGCGCUGGaUGCAGGCAacgcGAUGuCugGGu -3'
miRNA:   3'- gACGCGACC-GCGUCCGU----UUAC-GugUC- -5'
29362 3' -56 NC_006150.1 + 72128 0.68 0.860976
Target:  5'- --uCGCUcGGCGCGGGCGGua-CACGGg -3'
miRNA:   3'- gacGCGA-CCGCGUCCGUUuacGUGUC- -5'
29362 3' -56 NC_006150.1 + 73168 0.67 0.896256
Target:  5'- -aGCGCUGGCagacaugauGCGGGa--GUGUGCGGu -3'
miRNA:   3'- gaCGCGACCG---------CGUCCguuUACGUGUC- -5'
29362 3' -56 NC_006150.1 + 77362 0.76 0.433435
Target:  5'- -gGCGgUGGCGCAGGUAAagGaCACGGc -3'
miRNA:   3'- gaCGCgACCGCGUCCGUUuaC-GUGUC- -5'
29362 3' -56 NC_006150.1 + 95197 0.68 0.837318
Target:  5'- aUGgGCUGGUgaguguGCAGGUAG-UGCGCGa -3'
miRNA:   3'- gACgCGACCG------CGUCCGUUuACGUGUc -5'
29362 3' -56 NC_006150.1 + 103784 0.66 0.925873
Target:  5'- -cGCGCUGGCuGCcaauggccguuGGGCAuua-CACAGg -3'
miRNA:   3'- gaCGCGACCG-CG-----------UCCGUuuacGUGUC- -5'
29362 3' -56 NC_006150.1 + 106991 0.67 0.882798
Target:  5'- aUGCGgaGGUGCAGcCGGAUaCACGGa -3'
miRNA:   3'- gACGCgaCCGCGUCcGUUUAcGUGUC- -5'
29362 3' -56 NC_006150.1 + 109191 0.68 0.837318
Target:  5'- gCUGUGUUGcGUGCAGaCGAG-GCGCAGg -3'
miRNA:   3'- -GACGCGAC-CGCGUCcGUUUaCGUGUC- -5'
29362 3' -56 NC_006150.1 + 116650 0.68 0.868462
Target:  5'- gCUGUGaUGGCGCAG-CAGccguUGUACAGg -3'
miRNA:   3'- -GACGCgACCGCGUCcGUUu---ACGUGUC- -5'
29362 3' -56 NC_006150.1 + 117218 0.7 0.747683
Target:  5'- -cGCGUUGGCGUAGGC---UG-ACAGg -3'
miRNA:   3'- gaCGCGACCGCGUCCGuuuACgUGUC- -5'
29362 3' -56 NC_006150.1 + 132785 0.69 0.806758
Target:  5'- aUGCGCUGGCGCaacgcucucgagcggGGGCGuc-GCcCGGu -3'
miRNA:   3'- gACGCGACCGCG---------------UCCGUuuaCGuGUC- -5'
29362 3' -56 NC_006150.1 + 133256 0.67 0.889639
Target:  5'- ----aCUGGCGCAgGGCGAuAUGUGCAGg -3'
miRNA:   3'- gacgcGACCGCGU-CCGUU-UACGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.