miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29362 3' -56 NC_006150.1 + 103784 0.66 0.925873
Target:  5'- -cGCGCUGGCuGCcaauggccguuGGGCAuua-CACAGg -3'
miRNA:   3'- gaCGCGACCG-CG-----------UCCGUuuacGUGUC- -5'
29362 3' -56 NC_006150.1 + 95197 0.68 0.837318
Target:  5'- aUGgGCUGGUgaguguGCAGGUAG-UGCGCGa -3'
miRNA:   3'- gACgCGACCG------CGUCCGUUuACGUGUc -5'
29362 3' -56 NC_006150.1 + 140776 0.68 0.837318
Target:  5'- -cGCGCUcGGCGCAGGUGAAg--ACAa -3'
miRNA:   3'- gaCGCGA-CCGCGUCCGUUUacgUGUc -5'
29362 3' -56 NC_006150.1 + 116650 0.68 0.868462
Target:  5'- gCUGUGaUGGCGCAG-CAGccguUGUACAGg -3'
miRNA:   3'- -GACGCgACCGCGUCcGUUu---ACGUGUC- -5'
29362 3' -56 NC_006150.1 + 181637 0.68 0.875738
Target:  5'- gUGCGCUGGCGgAGcgagaagccgcaGCAAcgGCAgAa -3'
miRNA:   3'- gACGCGACCGCgUC------------CGUUuaCGUgUc -5'
29362 3' -56 NC_006150.1 + 73168 0.67 0.896256
Target:  5'- -aGCGCUGGCagacaugauGCGGGa--GUGUGCGGu -3'
miRNA:   3'- gaCGCGACCG---------CGUCCguuUACGUGUC- -5'
29362 3' -56 NC_006150.1 + 1785 0.67 0.902645
Target:  5'- --uUGCUGGUGCcucuGGgGAGUGCACGc -3'
miRNA:   3'- gacGCGACCGCGu---CCgUUUACGUGUc -5'
29362 3' -56 NC_006150.1 + 216925 0.67 0.902645
Target:  5'- -gGCGCUgcGGuCGCGGGUcag-GCACGGc -3'
miRNA:   3'- gaCGCGA--CC-GCGUCCGuuuaCGUGUC- -5'
29362 3' -56 NC_006150.1 + 202835 0.67 0.908803
Target:  5'- -gGUGgaGGCGgAGGCGcuuGAaGCGCGGg -3'
miRNA:   3'- gaCGCgaCCGCgUCCGU---UUaCGUGUC- -5'
29362 3' -56 NC_006150.1 + 109191 0.68 0.837318
Target:  5'- gCUGUGUUGcGUGCAGaCGAG-GCGCAGg -3'
miRNA:   3'- -GACGCGAC-CGCGUCcGUUUaCGUGUC- -5'
29362 3' -56 NC_006150.1 + 148275 0.69 0.812002
Target:  5'- uCUGUGCaggaUGGCGCuGGaCAGAUGCGgGu -3'
miRNA:   3'- -GACGCG----ACCGCGuCC-GUUUACGUgUc -5'
29362 3' -56 NC_006150.1 + 132785 0.69 0.806758
Target:  5'- aUGCGCUGGCGCaacgcucucgagcggGGGCGuc-GCcCGGu -3'
miRNA:   3'- gACGCGACCGCG---------------UCCGUuuaCGuGUC- -5'
29362 3' -56 NC_006150.1 + 220817 0.78 0.350042
Target:  5'- aUGCGgaGGCGUAGGCAAggcAUGCAUg- -3'
miRNA:   3'- gACGCgaCCGCGUCCGUU---UACGUGuc -5'
29362 3' -56 NC_006150.1 + 77362 0.76 0.433435
Target:  5'- -gGCGgUGGCGCAGGUAAagGaCACGGc -3'
miRNA:   3'- gaCGCgACCGCGUCCGUUuaC-GUGUC- -5'
29362 3' -56 NC_006150.1 + 41213 0.72 0.658205
Target:  5'- aUGUGCgUGuG-GCAGGCAGAUGCACuGa -3'
miRNA:   3'- gACGCG-AC-CgCGUCCGUUUACGUGuC- -5'
29362 3' -56 NC_006150.1 + 202983 0.71 0.678456
Target:  5'- gCUGCGgaGGCGgAGGCGAcgGCu--- -3'
miRNA:   3'- -GACGCgaCCGCgUCCGUUuaCGuguc -5'
29362 3' -56 NC_006150.1 + 217343 0.71 0.698555
Target:  5'- aCUGCGgUGGCGCAGucgcCAAGaGCGCAc -3'
miRNA:   3'- -GACGCgACCGCGUCc---GUUUaCGUGUc -5'
29362 3' -56 NC_006150.1 + 157350 0.71 0.718434
Target:  5'- gCUGcCGCUGGUGguGGUGgaggaagauGGUGCugGGg -3'
miRNA:   3'- -GAC-GCGACCGCguCCGU---------UUACGugUC- -5'
29362 3' -56 NC_006150.1 + 117218 0.7 0.747683
Target:  5'- -cGCGUUGGCGUAGGC---UG-ACAGg -3'
miRNA:   3'- gaCGCGACCGCGUCCGuuuACgUGUC- -5'
29362 3' -56 NC_006150.1 + 202892 0.69 0.794305
Target:  5'- -gGCGCcucgggcgguugUGGCGCGGGCAcuucuuguuGUGCaACAGc -3'
miRNA:   3'- gaCGCG------------ACCGCGUCCGUu--------UACG-UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.