miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 14442 0.72 0.434968
Target:  5'- gCUCCUCcCCCCucccCUCCCCCGg--- -3'
miRNA:   3'- aGAGGAGaGGGGua--GAGGGGGCagcg -5'
29366 3' -59.7 NC_006151.1 + 126745 0.72 0.426311
Target:  5'- -gUCCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- agAGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 42757 0.72 0.409308
Target:  5'- aUC-CCUCUCCCC-UCUCCCCgGgggGUg -3'
miRNA:   3'- -AGaGGAGAGGGGuAGAGGGGgCag-CG- -5'
29366 3' -59.7 NC_006151.1 + 12917 0.72 0.443726
Target:  5'- --cCCUCUCCCCccccccUCUCUCCCGcCGg -3'
miRNA:   3'- agaGGAGAGGGGu-----AGAGGGGGCaGCg -5'
29366 3' -59.7 NC_006151.1 + 59081 0.71 0.452582
Target:  5'- --aCCUCUCCCCcgcaaaGUC-CCCCCGgCGUu -3'
miRNA:   3'- agaGGAGAGGGG------UAGaGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 11427 0.71 0.498234
Target:  5'- gCUCCUCUCCgCCcacgcaaCUCCuCCCGccCGCg -3'
miRNA:   3'- aGAGGAGAGG-GGua-----GAGG-GGGCa-GCG- -5'
29366 3' -59.7 NC_006151.1 + 131417 0.71 0.488932
Target:  5'- gCUCCUcCUCCUCGcugCUCuCCUCGUCGg -3'
miRNA:   3'- aGAGGA-GAGGGGUa--GAG-GGGGCAGCg -5'
29366 3' -59.7 NC_006151.1 + 12820 0.71 0.488932
Target:  5'- gUCcCCUCUCCCCGccgC-CCCCCG-CGg -3'
miRNA:   3'- -AGaGGAGAGGGGUa--GaGGGGGCaGCg -5'
29366 3' -59.7 NC_006151.1 + 32679 0.71 0.488932
Target:  5'- uUC-CCUUUCCCCc-CUUCCCCGUCu- -3'
miRNA:   3'- -AGaGGAGAGGGGuaGAGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 65757 0.71 0.452582
Target:  5'- --gCCUCgUCCCCG---UCCCCGUCGCc -3'
miRNA:   3'- agaGGAG-AGGGGUagaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 7865 0.71 0.456152
Target:  5'- cCUCCUCUCCCCcaccccucuaucucUCUCUCCCGgUCc- -3'
miRNA:   3'- aGAGGAGAGGGGu-------------AGAGGGGGC-AGcg -5'
29366 3' -59.7 NC_006151.1 + 9162 0.71 0.479712
Target:  5'- cUUCCUCUCCCCc-CUCCaccgCCCGcccUCGCc -3'
miRNA:   3'- aGAGGAGAGGGGuaGAGG----GGGC---AGCG- -5'
29366 3' -59.7 NC_006151.1 + 37082 0.71 0.479712
Target:  5'- cCUCCUCgUCCUCGUcCUCCUCCGagGg -3'
miRNA:   3'- aGAGGAG-AGGGGUA-GAGGGGGCagCg -5'
29366 3' -59.7 NC_006151.1 + 126580 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 117975 0.7 0.545829
Target:  5'- cCUUCUCUCUCCcgCUCCCgucucgucUCGcCGCg -3'
miRNA:   3'- aGAGGAGAGGGGuaGAGGG--------GGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 126789 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 14876 0.7 0.545829
Target:  5'- --gCC-CUCCCCGccguUCUCgCCCGUCGa -3'
miRNA:   3'- agaGGaGAGGGGU----AGAGgGGGCAGCg -5'
29366 3' -59.7 NC_006151.1 + 25925 0.7 0.526591
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCcUCcCa -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcAGcG- -5'
29366 3' -59.7 NC_006151.1 + 29879 0.7 0.507614
Target:  5'- cUCUCgCUCUCUCCuUCgccaaccuUCUCCCGcUCGCg -3'
miRNA:   3'- -AGAG-GAGAGGGGuAG--------AGGGGGC-AGCG- -5'
29366 3' -59.7 NC_006151.1 + 65906 0.7 0.506672
Target:  5'- cCUCCUCccccucgUCCUCGUCgggCgCCCCGcCGCc -3'
miRNA:   3'- aGAGGAG-------AGGGGUAGa--G-GGGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.