Results 61 - 80 of 174 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 12917 | 0.72 | 0.443726 |
Target: 5'- --cCCUCUCCCCccccccUCUCUCCCGcCGg -3' miRNA: 3'- agaGGAGAGGGGu-----AGAGGGGGCaGCg -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 16005 | 0.72 | 0.443726 |
Target: 5'- --cCCUCUCCCCcUCcCCUCUGUUGUg -3' miRNA: 3'- agaGGAGAGGGGuAGaGGGGGCAGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 9283 | 0.72 | 0.443726 |
Target: 5'- cCUCaCUCUCgCg--CUCuCCCCGUCGCg -3' miRNA: 3'- aGAG-GAGAGgGguaGAG-GGGGCAGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 79014 | 0.72 | 0.443726 |
Target: 5'- gCUCgCUCgcCCCCAg-UCCCCCGaCGCa -3' miRNA: 3'- aGAG-GAGa-GGGGUagAGGGGGCaGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 65757 | 0.71 | 0.452582 |
Target: 5'- --gCCUCgUCCCCG---UCCCCGUCGCc -3' miRNA: 3'- agaGGAG-AGGGGUagaGGGGGCAGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 59081 | 0.71 | 0.452582 |
Target: 5'- --aCCUCUCCCCcgcaaaGUC-CCCCCGgCGUu -3' miRNA: 3'- agaGGAGAGGGG------UAGaGGGGGCaGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 7865 | 0.71 | 0.456152 |
Target: 5'- cCUCCUCUCCCCcaccccucuaucucUCUCUCCCGgUCc- -3' miRNA: 3'- aGAGGAGAGGGGu-------------AGAGGGGGC-AGcg -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 9162 | 0.71 | 0.479712 |
Target: 5'- cUUCCUCUCCCCc-CUCCaccgCCCGcccUCGCc -3' miRNA: 3'- aGAGGAGAGGGGuaGAGG----GGGC---AGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 37082 | 0.71 | 0.479712 |
Target: 5'- cCUCCUCgUCCUCGUcCUCCUCCGagGg -3' miRNA: 3'- aGAGGAG-AGGGGUA-GAGGGGGCagCg -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 32679 | 0.71 | 0.488932 |
Target: 5'- uUC-CCUUUCCCCc-CUUCCCCGUCu- -3' miRNA: 3'- -AGaGGAGAGGGGuaGAGGGGGCAGcg -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 12820 | 0.71 | 0.488932 |
Target: 5'- gUCcCCUCUCCCCGccgC-CCCCCG-CGg -3' miRNA: 3'- -AGaGGAGAGGGGUa--GaGGGGGCaGCg -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 131417 | 0.71 | 0.488932 |
Target: 5'- gCUCCUcCUCCUCGcugCUCuCCUCGUCGg -3' miRNA: 3'- aGAGGA-GAGGGGUa--GAG-GGGGCAGCg -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 11427 | 0.71 | 0.498234 |
Target: 5'- gCUCCUCUCCgCCcacgcaaCUCCuCCCGccCGCg -3' miRNA: 3'- aGAGGAGAGG-GGua-----GAGG-GGGCa-GCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 65906 | 0.7 | 0.506672 |
Target: 5'- cCUCCUCccccucgUCCUCGUCgggCgCCCCGcCGCc -3' miRNA: 3'- aGAGGAG-------AGGGGUAGa--G-GGGGCaGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 58534 | 0.7 | 0.507614 |
Target: 5'- cCUCCUCgCCgCC--CUCCCCgGUCGUc -3' miRNA: 3'- aGAGGAGaGG-GGuaGAGGGGgCAGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 29879 | 0.7 | 0.507614 |
Target: 5'- cUCUCgCUCUCUCCuUCgccaaccuUCUCCCGcUCGCg -3' miRNA: 3'- -AGAG-GAGAGGGGuAG--------AGGGGGC-AGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 32628 | 0.7 | 0.517068 |
Target: 5'- cUCUCC-CUCCCgc-UUCCCCCcUCGCc -3' miRNA: 3'- -AGAGGaGAGGGguaGAGGGGGcAGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 37205 | 0.7 | 0.517068 |
Target: 5'- cCUCCUCcgCCUC--CUCCUCCGcCGCg -3' miRNA: 3'- aGAGGAGa-GGGGuaGAGGGGGCaGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 10154 | 0.7 | 0.517068 |
Target: 5'- --cCCUCUCCgCGUCUCuuCCCCG-CGUc -3' miRNA: 3'- agaGGAGAGGgGUAGAG--GGGGCaGCG- -5' |
|||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 142783 | 0.7 | 0.526591 |
Target: 5'- cUCUCUggUCUggggCCCAgcUCUCCCCCGagCGCg -3' miRNA: 3'- -AGAGG--AGAg---GGGU--AGAGGGGGCa-GCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home