miRNA display CGI


Results 61 - 80 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 35819 0.68 0.631472
Target:  5'- uUCUCCUC-CUCCGgccgccuuccuccuUCUUCUCCGcCGCc -3'
miRNA:   3'- -AGAGGAGaGGGGU--------------AGAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 32748 0.68 0.624521
Target:  5'- cCUCUUCcuUCCCCAcacgccccgcUCUCCCaCGcCGCg -3'
miRNA:   3'- aGAGGAG--AGGGGU----------AGAGGGgGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 127620 0.69 0.614596
Target:  5'- cCUCCUCcacCCCCucgucuucgucGUcCUCCUcgCCGUCGCg -3'
miRNA:   3'- aGAGGAGa--GGGG-----------UA-GAGGG--GGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 127046 0.69 0.614596
Target:  5'- --cCCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- agaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126702 0.69 0.614596
Target:  5'- --cCCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- agaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 40360 0.69 0.614596
Target:  5'- -gUCCUCgUCCUCGUCcucgUCCCCGUCc- -3'
miRNA:   3'- agAGGAG-AGGGGUAGa---GGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 12228 0.69 0.614596
Target:  5'- aCUCCUCcCCCCccucCUCCCCCcUCcuGCc -3'
miRNA:   3'- aGAGGAGaGGGGua--GAGGGGGcAG--CG- -5'
29366 3' -59.7 NC_006151.1 + 109353 0.69 0.604683
Target:  5'- cCUCCUCgucuUCCgCCAccaccucuUCcgCCCCCGcCGCa -3'
miRNA:   3'- aGAGGAG----AGG-GGU--------AGa-GGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 26655 0.69 0.594789
Target:  5'- cCUCCUCguccUCCUCGUcCUCggCCUCGUCGUc -3'
miRNA:   3'- aGAGGAG----AGGGGUA-GAG--GGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 10608 0.69 0.594789
Target:  5'- cCUCCUCccUCCCCG-CgcgCCCgCGUgCGCu -3'
miRNA:   3'- aGAGGAG--AGGGGUaGa--GGGgGCA-GCG- -5'
29366 3' -59.7 NC_006151.1 + 32703 0.69 0.594789
Target:  5'- gUUCCU-UCCCCcgCUUCCCCGUUu- -3'
miRNA:   3'- aGAGGAgAGGGGuaGAGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 63051 0.69 0.584921
Target:  5'- --nCCUCUCCCCcauccUCUCCCCCa---- -3'
miRNA:   3'- agaGGAGAGGGGu----AGAGGGGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 56750 0.69 0.575085
Target:  5'- cCUCCUCUCCC--UCUUCCCCuUCc- -3'
miRNA:   3'- aGAGGAGAGGGguAGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 30532 0.69 0.575085
Target:  5'- --cCCUCaCCCCcgCUCCCCCcucUCGUu -3'
miRNA:   3'- agaGGAGaGGGGuaGAGGGGGc--AGCG- -5'
29366 3' -59.7 NC_006151.1 + 43034 0.69 0.565287
Target:  5'- aUCUCCUCgaucgCgCCCAgccaCCgCCGUCGCc -3'
miRNA:   3'- -AGAGGAGa----G-GGGUaga-GGgGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 37004 0.69 0.565287
Target:  5'- cCUCCgCcCCCCGgg-CCCCCGcCGCc -3'
miRNA:   3'- aGAGGaGaGGGGUagaGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 25007 0.69 0.565287
Target:  5'- -gUCCUCgUCCCCGcugCUgUCgCCGUCGCc -3'
miRNA:   3'- agAGGAG-AGGGGUa--GAgGG-GGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 18322 0.7 0.552617
Target:  5'- cCUCCUCggggcgcacguacagCCCGUCgUCCUCGUCGCu -3'
miRNA:   3'- aGAGGAGag-------------GGGUAGaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 127700 0.7 0.545829
Target:  5'- cUCUCCugcgacgagcUCguggaggCCCCGgcgUCCCCGUCGCg -3'
miRNA:   3'- -AGAGG----------AGa------GGGGUagaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 127014 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.