miRNA display CGI


Results 81 - 100 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 126535 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126580 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126625 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126670 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126789 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126834 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126879 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126924 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126969 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 127014 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 127700 0.7 0.545829
Target:  5'- cUCUCCugcgacgagcUCguggaggCCCCGgcgUCCCCGUCGCg -3'
miRNA:   3'- -AGAGG----------AGa------GGGGUagaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 37049 0.7 0.545829
Target:  5'- cCUCCUCgUCCUCGUCcUCCUCGUCc- -3'
miRNA:   3'- aGAGGAG-AGGGGUAGaGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 142783 0.7 0.526591
Target:  5'- cUCUCUggUCUggggCCCAgcUCUCCCCCGagCGCg -3'
miRNA:   3'- -AGAGG--AGAg---GGGU--AGAGGGGGCa-GCG- -5'
29366 3' -59.7 NC_006151.1 + 36596 0.7 0.526591
Target:  5'- --cCCgcuUCCCCAgcCUCCCCCGcCGCc -3'
miRNA:   3'- agaGGag-AGGGGUa-GAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 25925 0.7 0.526591
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCcUCcCa -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcAGcG- -5'
29366 3' -59.7 NC_006151.1 + 10154 0.7 0.517068
Target:  5'- --cCCUCUCCgCGUCUCuuCCCCG-CGUc -3'
miRNA:   3'- agaGGAGAGGgGUAGAG--GGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 37205 0.7 0.517068
Target:  5'- cCUCCUCcgCCUC--CUCCUCCGcCGCg -3'
miRNA:   3'- aGAGGAGa-GGGGuaGAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 32628 0.7 0.517068
Target:  5'- cUCUCC-CUCCCgc-UUCCCCCcUCGCc -3'
miRNA:   3'- -AGAGGaGAGGGguaGAGGGGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 58534 0.7 0.507614
Target:  5'- cCUCCUCgCCgCC--CUCCCCgGUCGUc -3'
miRNA:   3'- aGAGGAGaGG-GGuaGAGGGGgCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 29879 0.7 0.507614
Target:  5'- cUCUCgCUCUCUCCuUCgccaaccuUCUCCCGcUCGCg -3'
miRNA:   3'- -AGAG-GAGAGGGGuAG--------AGGGGGC-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.