miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 10756 0.74 0.338272
Target:  5'- cCUCC-CUCUCCGUCUCCCUCGcCu- -3'
miRNA:   3'- aGAGGaGAGGGGUAGAGGGGGCaGcg -5'
29366 3' -59.7 NC_006151.1 + 62882 0.74 0.338272
Target:  5'- -aUCCUCUCCCCcauccUCUCCCCCaUCc- -3'
miRNA:   3'- agAGGAGAGGGGu----AGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 62990 0.74 0.338272
Target:  5'- -aUCCUCUCCCCcauccUCUCCCCCaUCc- -3'
miRNA:   3'- agAGGAGAGGGGu----AGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 62954 0.74 0.338272
Target:  5'- -aUCCUCUCCCCcauccUCUCCCCCaUCc- -3'
miRNA:   3'- agAGGAGAGGGGu----AGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 62918 0.74 0.338272
Target:  5'- -aUCCUCUCCCCcauccUCUCCCCCaUCc- -3'
miRNA:   3'- agAGGAGAGGGGu----AGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 63026 0.74 0.338272
Target:  5'- -aUCCUCUCCCCcauccUCUCCCCCaUCc- -3'
miRNA:   3'- agAGGAGAGGGGu----AGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 40310 0.74 0.345707
Target:  5'- gCUCCUCgaggCCCU-UCUCCUCCGUCu- -3'
miRNA:   3'- aGAGGAGa---GGGGuAGAGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 11380 0.74 0.345707
Target:  5'- cUCgccgCCUCUUCCCccCUCCUCCGcCGCc -3'
miRNA:   3'- -AGa---GGAGAGGGGuaGAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 81325 0.73 0.353258
Target:  5'- cCUCCUCcgCCCC--CUCgUCCGUCGCc -3'
miRNA:   3'- aGAGGAGa-GGGGuaGAGgGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 26757 0.73 0.353258
Target:  5'- cCUCCUCgUCCUCGUCUuccuccUCCCCGUCu- -3'
miRNA:   3'- aGAGGAG-AGGGGUAGA------GGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 42617 0.73 0.353258
Target:  5'- cCUCCUcCUCCCCcucucCUCCCCCcUCGg -3'
miRNA:   3'- aGAGGA-GAGGGGua---GAGGGGGcAGCg -5'
29366 3' -59.7 NC_006151.1 + 131213 0.73 0.368707
Target:  5'- cCUCCUCUUCCgCGUC-CCaCgCGUCGCc -3'
miRNA:   3'- aGAGGAGAGGG-GUAGaGG-GgGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 56793 0.73 0.384613
Target:  5'- --cCCUCcCCCCcUCUCCCCCucucUCGCu -3'
miRNA:   3'- agaGGAGaGGGGuAGAGGGGGc---AGCG- -5'
29366 3' -59.7 NC_006151.1 + 42440 0.73 0.392735
Target:  5'- cCUCCUC-CCCCAgCUCCUCgCG-CGCc -3'
miRNA:   3'- aGAGGAGaGGGGUaGAGGGG-GCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 42757 0.72 0.409308
Target:  5'- aUC-CCUCUCCCC-UCUCCCCgGgggGUg -3'
miRNA:   3'- -AGaGGAGAGGGGuAGAGGGGgCag-CG- -5'
29366 3' -59.7 NC_006151.1 + 126745 0.72 0.426311
Target:  5'- -gUCCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- agAGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 127089 0.72 0.434968
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCcuCCGUccCGCg -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGG--GGCA--GCG- -5'
29366 3' -59.7 NC_006151.1 + 14442 0.72 0.434968
Target:  5'- gCUCCUCcCCCCucccCUCCCCCGg--- -3'
miRNA:   3'- aGAGGAGaGGGGua--GAGGGGGCagcg -5'
29366 3' -59.7 NC_006151.1 + 93195 0.72 0.443726
Target:  5'- -gUCCUCcCCuCCGUC-CCCCCGUC-Ca -3'
miRNA:   3'- agAGGAGaGG-GGUAGaGGGGGCAGcG- -5'
29366 3' -59.7 NC_006151.1 + 9283 0.72 0.443726
Target:  5'- cCUCaCUCUCgCg--CUCuCCCCGUCGCg -3'
miRNA:   3'- aGAG-GAGAGgGguaGAG-GGGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.