miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 25820 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 25855 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 25890 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 25925 0.7 0.526591
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCcUCcCa -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcAGcG- -5'
29366 3' -59.7 NC_006151.1 + 25959 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 25994 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26029 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26064 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26099 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26134 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26437 0.66 0.76056
Target:  5'- -gUCUUCUUCaCCGUCUucgccgucuuccCCCCCGUCc- -3'
miRNA:   3'- agAGGAGAGG-GGUAGA------------GGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 26487 0.67 0.693737
Target:  5'- cCUCCUCguccUCUCCAUCgUCCUCGUCc- -3'
miRNA:   3'- aGAGGAG----AGGGGUAGaGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 26536 0.75 0.296126
Target:  5'- gUCUUCaUCuUCCCCGUC-CCCgCCGUCGUc -3'
miRNA:   3'- -AGAGG-AG-AGGGGUAGaGGG-GGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 26655 0.69 0.594789
Target:  5'- cCUCCUCguccUCCUCGUcCUCggCCUCGUCGUc -3'
miRNA:   3'- aGAGGAG----AGGGGUA-GAG--GGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 26713 0.66 0.769745
Target:  5'- -gUCCUCgUCCCCuuccUCUUCCUCcUCGUc -3'
miRNA:   3'- agAGGAG-AGGGGu---AGAGGGGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 26757 0.73 0.353258
Target:  5'- cCUCCUCgUCCUCGUCUuccuccUCCCCGUCu- -3'
miRNA:   3'- aGAGGAG-AGGGGUAGA------GGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 26790 0.77 0.224296
Target:  5'- cCUCUUCgUCCUCGUCcUCCCCGUCGUc -3'
miRNA:   3'- aGAGGAG-AGGGGUAGaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 28147 0.75 0.296126
Target:  5'- --gCCUCUCCCgGUCgaUCCCCGUCGg -3'
miRNA:   3'- agaGGAGAGGGgUAGa-GGGGGCAGCg -5'
29366 3' -59.7 NC_006151.1 + 29879 0.7 0.507614
Target:  5'- cUCUCgCUCUCUCCuUCgccaaccuUCUCCCGcUCGCg -3'
miRNA:   3'- -AGAG-GAGAGGGGuAG--------AGGGGGC-AGCG- -5'
29366 3' -59.7 NC_006151.1 + 30473 0.74 0.315969
Target:  5'- --cCCUCUCgCCCAcgcgcccUCUCCCCCcuUCGCg -3'
miRNA:   3'- agaGGAGAG-GGGU-------AGAGGGGGc-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.