miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 126670 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126625 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126580 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126535 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 117975 0.7 0.545829
Target:  5'- cCUUCUCUCUCCcgCUCCCgucucgucUCGcCGCg -3'
miRNA:   3'- aGAGGAGAGGGGuaGAGGG--------GGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 110989 0.67 0.693737
Target:  5'- --gCCUCggCCgcauCCAUCUgcagCCCCGUCGCg -3'
miRNA:   3'- agaGGAGa-GG----GGUAGAg---GGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 109353 0.69 0.604683
Target:  5'- cCUCCUCgucuUCCgCCAccaccucuUCcgCCCCCGcCGCa -3'
miRNA:   3'- aGAGGAG----AGG-GGU--------AGa-GGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 109147 0.68 0.664204
Target:  5'- cCUCCgUCUCCaCAUC-CCgCCGcCGCa -3'
miRNA:   3'- aGAGG-AGAGGgGUAGaGGgGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 101799 0.66 0.741877
Target:  5'- -gUCCUCgccgucgcCCCCGUC-CCCgCCGUCc- -3'
miRNA:   3'- agAGGAGa-------GGGGUAGaGGG-GGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 93331 0.68 0.654301
Target:  5'- cUCUCCcaUCCCCGUUcccgUCCCaCCcUCGCc -3'
miRNA:   3'- -AGAGGagAGGGGUAG----AGGG-GGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 93281 0.66 0.769745
Target:  5'- --gCCgg-CCCCAUCUCCCuucggCCGUCa- -3'
miRNA:   3'- agaGGagaGGGGUAGAGGG-----GGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 93195 0.72 0.443726
Target:  5'- -gUCCUCcCCuCCGUC-CCCCCGUC-Ca -3'
miRNA:   3'- agAGGAGaGG-GGUAGaGGGGGCAGcG- -5'
29366 3' -59.7 NC_006151.1 + 93077 0.67 0.703495
Target:  5'- gCUCCgUCUCaccucugCCGUC-CCCCCGcCGUc -3'
miRNA:   3'- aGAGG-AGAGg------GGUAGaGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 93016 0.76 0.24644
Target:  5'- --cCCUCUCCCCcaccuUCUCuCUCCGUCGUc -3'
miRNA:   3'- agaGGAGAGGGGu----AGAG-GGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 90599 0.68 0.674084
Target:  5'- aUCUCCguaggCguggCCCCc-UUCCCCCGagGCg -3'
miRNA:   3'- -AGAGGa----Ga---GGGGuaGAGGGGGCagCG- -5'
29366 3' -59.7 NC_006151.1 + 87352 0.66 0.76056
Target:  5'- cCUCCagggCCUgGcggCCCCCGUCGCg -3'
miRNA:   3'- aGAGGaga-GGGgUagaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 84182 0.67 0.693737
Target:  5'- cCUCCUCgccgCCgCCGUg-CCCCCGg-GCg -3'
miRNA:   3'- aGAGGAGa---GG-GGUAgaGGGGGCagCG- -5'
29366 3' -59.7 NC_006151.1 + 82834 0.67 0.703495
Target:  5'- cCUCCcacgCCgUCGUCguugCCUCCGUCGCg -3'
miRNA:   3'- aGAGGaga-GG-GGUAGa---GGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 81325 0.73 0.353258
Target:  5'- cCUCCUCcgCCCC--CUCgUCCGUCGCc -3'
miRNA:   3'- aGAGGAGa-GGGGuaGAGgGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 80630 0.85 0.06892
Target:  5'- cUCUCCcC-CCCCGUCUCCCCCG-CGCc -3'
miRNA:   3'- -AGAGGaGaGGGGUAGAGGGGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.