miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 135056 0.67 0.713196
Target:  5'- gUCcCC-CUCCUCGUCUUCCCC--CGCc -3'
miRNA:   3'- -AGaGGaGAGGGGUAGAGGGGGcaGCG- -5'
29366 3' -59.7 NC_006151.1 + 131417 0.71 0.488932
Target:  5'- gCUCCUcCUCCUCGcugCUCuCCUCGUCGg -3'
miRNA:   3'- aGAGGA-GAGGGGUa--GAG-GGGGCAGCg -5'
29366 3' -59.7 NC_006151.1 + 131369 0.67 0.693737
Target:  5'- cCUCCUCcgCCCCccccucuucCUCCuCCuCGUCGUc -3'
miRNA:   3'- aGAGGAGa-GGGGua-------GAGG-GG-GCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 131333 0.74 0.330955
Target:  5'- cCUCCUCaCCCCcgCgccggCCCCCGcUCGUc -3'
miRNA:   3'- aGAGGAGaGGGGuaGa----GGGGGC-AGCG- -5'
29366 3' -59.7 NC_006151.1 + 131300 0.75 0.296126
Target:  5'- cCUCCUcCUCCUCcUCgUCCCCGUCGUc -3'
miRNA:   3'- aGAGGA-GAGGGGuAGaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 131241 0.67 0.732396
Target:  5'- gUCggCCgccacguacagCUCCCCGUCggaccacgcgCCCCCcUCGCu -3'
miRNA:   3'- -AGa-GGa----------GAGGGGUAGa---------GGGGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 131213 0.73 0.368707
Target:  5'- cCUCCUCUUCCgCGUC-CCaCgCGUCGCc -3'
miRNA:   3'- aGAGGAGAGGG-GUAGaGG-GgGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 127763 0.77 0.208316
Target:  5'- cCUCCUCUUCCuCGUCgucgcccucccccUCCCCCGcCGCc -3'
miRNA:   3'- aGAGGAGAGGG-GUAG-------------AGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 127700 0.7 0.545829
Target:  5'- cUCUCCugcgacgagcUCguggaggCCCCGgcgUCCCCGUCGCg -3'
miRNA:   3'- -AGAGG----------AGa------GGGGUagaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 127620 0.69 0.614596
Target:  5'- cCUCCUCcacCCCCucgucuucgucGUcCUCCUcgCCGUCGCg -3'
miRNA:   3'- aGAGGAGa--GGGG-----------UA-GAGGG--GGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 127089 0.72 0.434968
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCcuCCGUccCGCg -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGG--GGCA--GCG- -5'
29366 3' -59.7 NC_006151.1 + 127046 0.69 0.614596
Target:  5'- --cCCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- agaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 127014 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126969 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126924 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126879 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126834 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126789 0.7 0.545829
Target:  5'- gUC-CCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- -AGaGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126745 0.72 0.426311
Target:  5'- -gUCCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- agAGGAGAGGGGu-------AGAGGGG--GCAGcg -5'
29366 3' -59.7 NC_006151.1 + 126702 0.69 0.614596
Target:  5'- --cCCUCUCCCCuccgucccUCUCCCCucCGUCc- -3'
miRNA:   3'- agaGGAGAGGGGu-------AGAGGGG--GCAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.