miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 140751 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140919 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 40487 0.79 0.163734
Target:  5'- cCUCCUCUCCU--UCUCCUCCG-CGCg -3'
miRNA:   3'- aGAGGAGAGGGguAGAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 127763 0.77 0.208316
Target:  5'- cCUCCUCUUCCuCGUCgucgcccucccccUCCCCCGcCGCc -3'
miRNA:   3'- aGAGGAGAGGG-GUAG-------------AGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 42470 0.77 0.208816
Target:  5'- cCUCCUC-CCCCAaCUCCCCgGgCGCc -3'
miRNA:   3'- aGAGGAGaGGGGUaGAGGGGgCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 45246 0.77 0.208816
Target:  5'- cCUCCUCcccccuugcUCCCUGUCccagUCCCCCGUCGg -3'
miRNA:   3'- aGAGGAG---------AGGGGUAG----AGGGGGCAGCg -5'
29366 3' -59.7 NC_006151.1 + 32326 0.77 0.21903
Target:  5'- uUCUCCgcgUCCCCAUCUCCgaggCCCGagGCg -3'
miRNA:   3'- -AGAGGag-AGGGGUAGAGG----GGGCagCG- -5'
29366 3' -59.7 NC_006151.1 + 26790 0.77 0.224296
Target:  5'- cCUCUUCgUCCUCGUCcUCCCCGUCGUc -3'
miRNA:   3'- aGAGGAG-AGGGGUAGaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 8922 0.77 0.224296
Target:  5'- cUCUCCUCUCCCCGcccccgC-CCCCUGUCcCg -3'
miRNA:   3'- -AGAGGAGAGGGGUa-----GaGGGGGCAGcG- -5'
29366 3' -59.7 NC_006151.1 + 12611 0.76 0.235149
Target:  5'- cCUCCUCcCCCCAUUUCCCCCa---- -3'
miRNA:   3'- aGAGGAGaGGGGUAGAGGGGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 93016 0.76 0.24644
Target:  5'- --cCCUCUCCCCcaccuUCUCuCUCCGUCGUc -3'
miRNA:   3'- agaGGAGAGGGGu----AGAG-GGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 38499 0.75 0.276632
Target:  5'- cUCUCCggCUCCuCCGgcuacgccagCUCCCCCGcCGCc -3'
miRNA:   3'- -AGAGGa-GAGG-GGUa---------GAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 26536 0.75 0.296126
Target:  5'- gUCUUCaUCuUCCCCGUC-CCCgCCGUCGUc -3'
miRNA:   3'- -AGAGG-AG-AGGGGUAGaGGG-GGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 131300 0.75 0.296126
Target:  5'- cCUCCUcCUCCUCcUCgUCCCCGUCGUc -3'
miRNA:   3'- aGAGGA-GAGGGGuAGaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 28147 0.75 0.296126
Target:  5'- --gCCUCUCCCgGUCgaUCCCCGUCGg -3'
miRNA:   3'- agaGGAGAGGGgUAGa-GGGGGCAGCg -5'
29366 3' -59.7 NC_006151.1 + 25509 0.75 0.302857
Target:  5'- cUCUcCCUC-CCCCAUCUCCCCCc---- -3'
miRNA:   3'- -AGA-GGAGaGGGGUAGAGGGGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 12882 0.74 0.309705
Target:  5'- cUCUCCUCUCCCCccAUCcCgCCCCGcucccCGCc -3'
miRNA:   3'- -AGAGGAGAGGGG--UAGaG-GGGGCa----GCG- -5'
29366 3' -59.7 NC_006151.1 + 30473 0.74 0.315969
Target:  5'- --cCCUCUCgCCCAcgcgcccUCUCCCCCcuUCGCg -3'
miRNA:   3'- agaGGAGAG-GGGU-------AGAGGGGGc-AGCG- -5'
29366 3' -59.7 NC_006151.1 + 12480 0.74 0.323754
Target:  5'- cUCUCCUCUCUC--UCUCCCCgGUCcCg -3'
miRNA:   3'- -AGAGGAGAGGGguAGAGGGGgCAGcG- -5'
29366 3' -59.7 NC_006151.1 + 131333 0.74 0.330955
Target:  5'- cCUCCUCaCCCCcgCgccggCCCCCGcUCGUc -3'
miRNA:   3'- aGAGGAGaGGGGuaGa----GGGGGC-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.