Results 21 - 40 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 140981 | 1.12 | 0.000853 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCCGUCGCa -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGGCAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 18454 | 0.66 | 0.751268 |
Target: 5'- cCUCCUCgUCgUCGUCgUCgCCGUCGUa -3' miRNA: 3'- aGAGGAG-AGgGGUAGaGGgGGCAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 41424 | 0.66 | 0.778815 |
Target: 5'- -gUCUUCcgUCCCCAcucccagcCUCCCCCGcUGCc -3' miRNA: 3'- agAGGAG--AGGGGUa-------GAGGGGGCaGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 142579 | 0.66 | 0.777913 |
Target: 5'- cUCUCCUCUCcgguCCCGgcggggcUCUCCUCUaGUCugGCa -3' miRNA: 3'- -AGAGGAGAG----GGGU-------AGAGGGGG-CAG--CG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 26713 | 0.66 | 0.769745 |
Target: 5'- -gUCCUCgUCCCCuuccUCUUCCUCcUCGUc -3' miRNA: 3'- agAGGAG-AGGGGu---AGAGGGGGcAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 10540 | 0.66 | 0.769745 |
Target: 5'- cUCUCCacgCCCCGU-UCCgCCCGgCGCc -3' miRNA: 3'- -AGAGGagaGGGGUAgAGG-GGGCaGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 40334 | 0.66 | 0.769745 |
Target: 5'- nCUUCUCUCCCC-UCgCCCUCGg--- -3' miRNA: 3'- aGAGGAGAGGGGuAGaGGGGGCagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 93281 | 0.66 | 0.769745 |
Target: 5'- --gCCgg-CCCCAUCUCCCuucggCCGUCa- -3' miRNA: 3'- agaGGagaGGGGUAGAGGG-----GGCAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 87352 | 0.66 | 0.76056 |
Target: 5'- cCUCCagggCCUgGcggCCCCCGUCGCg -3' miRNA: 3'- aGAGGaga-GGGgUagaGGGGGCAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 26437 | 0.66 | 0.76056 |
Target: 5'- -gUCUUCUUCaCCGUCUucgccgucuuccCCCCCGUCc- -3' miRNA: 3'- agAGGAGAGG-GGUAGA------------GGGGGCAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 12988 | 0.66 | 0.754997 |
Target: 5'- cCUCCcgaCUCaCCCGUCccgggggauucccugUCCCUCGgggCGCg -3' miRNA: 3'- aGAGGa--GAG-GGGUAG---------------AGGGGGCa--GCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 8881 | 0.66 | 0.778815 |
Target: 5'- cCUCCgcccgaCUUUCCGacUCUCCUCCGUCu- -3' miRNA: 3'- aGAGGa-----GAGGGGU--AGAGGGGGCAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 60584 | 0.66 | 0.751268 |
Target: 5'- ---gCUgUCCCCcgCcgCCCCCGcCGCc -3' miRNA: 3'- agagGAgAGGGGuaGa-GGGGGCaGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 101799 | 0.66 | 0.741877 |
Target: 5'- -gUCCUCgccgucgcCCCCGUC-CCCgCCGUCc- -3' miRNA: 3'- agAGGAGa-------GGGGUAGaGGG-GGCAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 131241 | 0.67 | 0.732396 |
Target: 5'- gUCggCCgccacguacagCUCCCCGUCggaccacgcgCCCCCcUCGCu -3' miRNA: 3'- -AGa-GGa----------GAGGGGUAGa---------GGGGGcAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 71456 | 0.67 | 0.732396 |
Target: 5'- cCUCCUC-CCUCG-CUCCgCC-UCGCc -3' miRNA: 3'- aGAGGAGaGGGGUaGAGGgGGcAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 32217 | 0.67 | 0.732396 |
Target: 5'- gCUCCcgCUCCCCcguuUUUCCuCCUGgcCGCg -3' miRNA: 3'- aGAGGa-GAGGGGu---AGAGG-GGGCa-GCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 6896 | 0.67 | 0.722833 |
Target: 5'- aUUUCUCUCgCCCA-CUUCCUC-UCGCg -3' miRNA: 3'- aGAGGAGAG-GGGUaGAGGGGGcAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 135056 | 0.67 | 0.713196 |
Target: 5'- gUCcCC-CUCCUCGUCUUCCCC--CGCc -3' miRNA: 3'- -AGaGGaGAGGGGUAGAGGGGGcaGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 747 | 0.67 | 0.713196 |
Target: 5'- gCUCCgcggCgcccgCCCCAUuggCUCCCCUcgcgccacgcgGUCGCc -3' miRNA: 3'- aGAGGa---Ga----GGGGUA---GAGGGGG-----------CAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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