miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 40334 0.66 0.769745
Target:  5'- nCUUCUCUCCCC-UCgCCCUCGg--- -3'
miRNA:   3'- aGAGGAGAGGGGuAGaGGGGGCagcg -5'
29366 3' -59.7 NC_006151.1 + 10540 0.66 0.769745
Target:  5'- cUCUCCacgCCCCGU-UCCgCCCGgCGCc -3'
miRNA:   3'- -AGAGGagaGGGGUAgAGG-GGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 26713 0.66 0.769745
Target:  5'- -gUCCUCgUCCCCuuccUCUUCCUCcUCGUc -3'
miRNA:   3'- agAGGAG-AGGGGu---AGAGGGGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 142579 0.66 0.777913
Target:  5'- cUCUCCUCUCcgguCCCGgcggggcUCUCCUCUaGUCugGCa -3'
miRNA:   3'- -AGAGGAGAG----GGGU-------AGAGGGGG-CAG--CG- -5'
29366 3' -59.7 NC_006151.1 + 41424 0.66 0.778815
Target:  5'- -gUCUUCcgUCCCCAcucccagcCUCCCCCGcUGCc -3'
miRNA:   3'- agAGGAG--AGGGGUa-------GAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 71456 0.67 0.732396
Target:  5'- cCUCCUC-CCUCG-CUCCgCC-UCGCc -3'
miRNA:   3'- aGAGGAGaGGGGUaGAGGgGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 32217 0.67 0.732396
Target:  5'- gCUCCcgCUCCCCcguuUUUCCuCCUGgcCGCg -3'
miRNA:   3'- aGAGGa-GAGGGGu---AGAGG-GGGCa-GCG- -5'
29366 3' -59.7 NC_006151.1 + 26487 0.67 0.693737
Target:  5'- cCUCCUCguccUCUCCAUCgUCCUCGUCc- -3'
miRNA:   3'- aGAGGAG----AGGGGUAGaGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 84182 0.67 0.693737
Target:  5'- cCUCCUCgccgCCgCCGUg-CCCCCGg-GCg -3'
miRNA:   3'- aGAGGAGa---GG-GGUAgaGGGGGCagCG- -5'
29366 3' -59.7 NC_006151.1 + 131369 0.67 0.693737
Target:  5'- cCUCCUCcgCCCCccccucuucCUCCuCCuCGUCGUc -3'
miRNA:   3'- aGAGGAGa-GGGGua-------GAGG-GG-GCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 36438 0.67 0.694715
Target:  5'- cCUCCUC-CUCCggCUCUCCCGgccccucggcagcccCGCg -3'
miRNA:   3'- aGAGGAGaGGGGuaGAGGGGGCa--------------GCG- -5'
29366 3' -59.7 NC_006151.1 + 34209 0.67 0.703495
Target:  5'- gCUCCcCUCCCCccaacucccUCUCUCCCGaCGa -3'
miRNA:   3'- aGAGGaGAGGGGu--------AGAGGGGGCaGCg -5'
29366 3' -59.7 NC_006151.1 + 9447 0.67 0.703495
Target:  5'- cUCUCUUCUUCCgCGUCUucuUCCgCGUcCGCu -3'
miRNA:   3'- -AGAGGAGAGGG-GUAGA---GGGgGCA-GCG- -5'
29366 3' -59.7 NC_006151.1 + 80603 0.67 0.703495
Target:  5'- gUC-CCUCUCCCCc---CUCCCGUCu- -3'
miRNA:   3'- -AGaGGAGAGGGGuagaGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 93077 0.67 0.703495
Target:  5'- gCUCCgUCUCaccucugCCGUC-CCCCCGcCGUc -3'
miRNA:   3'- aGAGG-AGAGg------GGUAGaGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 82834 0.67 0.703495
Target:  5'- cCUCCcacgCCgUCGUCguugCCUCCGUCGCg -3'
miRNA:   3'- aGAGGaga-GG-GGUAGa---GGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 9092 0.67 0.712229
Target:  5'- cCUCCcuucCUCCCCg---CCCCCGacccgccUCGCa -3'
miRNA:   3'- aGAGGa---GAGGGGuagaGGGGGC-------AGCG- -5'
29366 3' -59.7 NC_006151.1 + 747 0.67 0.713196
Target:  5'- gCUCCgcggCgcccgCCCCAUuggCUCCCCUcgcgccacgcgGUCGCc -3'
miRNA:   3'- aGAGGa---Ga----GGGGUA---GAGGGGG-----------CAGCG- -5'
29366 3' -59.7 NC_006151.1 + 135056 0.67 0.713196
Target:  5'- gUCcCC-CUCCUCGUCUUCCCC--CGCc -3'
miRNA:   3'- -AGaGGaGAGGGGUAGAGGGGGcaGCG- -5'
29366 3' -59.7 NC_006151.1 + 6896 0.67 0.722833
Target:  5'- aUUUCUCUCgCCCA-CUUCCUC-UCGCg -3'
miRNA:   3'- aGAGGAGAG-GGGUaGAGGGGGcAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.