miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 11857 0.82 0.104156
Target:  5'- cUUCCUCUCCCCGUCgaCUCgCGUCGCg -3'
miRNA:   3'- aGAGGAGAGGGGUAGa-GGGgGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 12228 0.69 0.614596
Target:  5'- aCUCCUCcCCCCccucCUCCCCCcUCcuGCc -3'
miRNA:   3'- aGAGGAGaGGGGua--GAGGGGGcAG--CG- -5'
29366 3' -59.7 NC_006151.1 + 12480 0.74 0.323754
Target:  5'- cUCUCCUCUCUC--UCUCCCCgGUCcCg -3'
miRNA:   3'- -AGAGGAGAGGGguAGAGGGGgCAGcG- -5'
29366 3' -59.7 NC_006151.1 + 12611 0.76 0.235149
Target:  5'- cCUCCUCcCCCCAUUUCCCCCa---- -3'
miRNA:   3'- aGAGGAGaGGGGUAGAGGGGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 12647 0.68 0.664204
Target:  5'- aCUCCUC-CCacaCCAg--CCCCCGcCGCc -3'
miRNA:   3'- aGAGGAGaGG---GGUagaGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 12820 0.71 0.488932
Target:  5'- gUCcCCUCUCCCCGccgC-CCCCCG-CGg -3'
miRNA:   3'- -AGaGGAGAGGGGUa--GaGGGGGCaGCg -5'
29366 3' -59.7 NC_006151.1 + 12882 0.74 0.309705
Target:  5'- cUCUCCUCUCCCCccAUCcCgCCCCGcucccCGCc -3'
miRNA:   3'- -AGAGGAGAGGGG--UAGaG-GGGGCa----GCG- -5'
29366 3' -59.7 NC_006151.1 + 12917 0.72 0.443726
Target:  5'- --cCCUCUCCCCccccccUCUCUCCCGcCGg -3'
miRNA:   3'- agaGGAGAGGGGu-----AGAGGGGGCaGCg -5'
29366 3' -59.7 NC_006151.1 + 12988 0.66 0.754997
Target:  5'- cCUCCcgaCUCaCCCGUCccgggggauucccugUCCCUCGgggCGCg -3'
miRNA:   3'- aGAGGa--GAG-GGGUAG---------------AGGGGGCa--GCG- -5'
29366 3' -59.7 NC_006151.1 + 14311 0.68 0.634452
Target:  5'- cCUCC-CUCCCCA----CCCCG-CGCg -3'
miRNA:   3'- aGAGGaGAGGGGUagagGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 14442 0.72 0.434968
Target:  5'- gCUCCUCcCCCCucccCUCCCCCGg--- -3'
miRNA:   3'- aGAGGAGaGGGGua--GAGGGGGCagcg -5'
29366 3' -59.7 NC_006151.1 + 14876 0.7 0.545829
Target:  5'- --gCC-CUCCCCGccguUCUCgCCCGUCGa -3'
miRNA:   3'- agaGGaGAGGGGU----AGAGgGGGCAGCg -5'
29366 3' -59.7 NC_006151.1 + 16005 0.72 0.443726
Target:  5'- --cCCUCUCCCCcUCcCCUCUGUUGUg -3'
miRNA:   3'- agaGGAGAGGGGuAGaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 18322 0.7 0.552617
Target:  5'- cCUCCUCggggcgcacguacagCCCGUCgUCCUCGUCGCu -3'
miRNA:   3'- aGAGGAGag-------------GGGUAGaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 18454 0.66 0.751268
Target:  5'- cCUCCUCgUCgUCGUCgUCgCCGUCGUa -3'
miRNA:   3'- aGAGGAG-AGgGGUAGaGGgGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 23116 0.82 0.109606
Target:  5'- cCUCCUCggCCCCGcgcccCUCCUCCGUCGCc -3'
miRNA:   3'- aGAGGAGa-GGGGUa----GAGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 25007 0.69 0.565287
Target:  5'- -gUCCUCgUCCCCGcugCUgUCgCCGUCGCc -3'
miRNA:   3'- agAGGAG-AGGGGUa--GAgGG-GGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 25509 0.75 0.302857
Target:  5'- cUCUcCCUC-CCCCAUCUCCCCCc---- -3'
miRNA:   3'- -AGA-GGAGaGGGGUAGAGGGGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 25750 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 25785 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.