miRNA display CGI


Results 1 - 20 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 747 0.67 0.713196
Target:  5'- gCUCCgcggCgcccgCCCCAUuggCUCCCCUcgcgccacgcgGUCGCc -3'
miRNA:   3'- aGAGGa---Ga----GGGGUA---GAGGGGG-----------CAGCG- -5'
29366 3' -59.7 NC_006151.1 + 3665 0.67 0.683931
Target:  5'- cCUCCUCgccgUCCCCGgggCggcgggCCCCgGgcgCGCg -3'
miRNA:   3'- aGAGGAG----AGGGGUa--Ga-----GGGGgCa--GCG- -5'
29366 3' -59.7 NC_006151.1 + 6036 0.68 0.664204
Target:  5'- -gUCCUcCUCCUCGUCUUCgUCGUCuaGCa -3'
miRNA:   3'- agAGGA-GAGGGGUAGAGGgGGCAG--CG- -5'
29366 3' -59.7 NC_006151.1 + 6896 0.67 0.722833
Target:  5'- aUUUCUCUCgCCCA-CUUCCUC-UCGCg -3'
miRNA:   3'- aGAGGAGAG-GGGUaGAGGGGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 7865 0.71 0.456152
Target:  5'- cCUCCUCUCCCCcaccccucuaucucUCUCUCCCGgUCc- -3'
miRNA:   3'- aGAGGAGAGGGGu-------------AGAGGGGGC-AGcg -5'
29366 3' -59.7 NC_006151.1 + 8705 0.82 0.101528
Target:  5'- cUCUCCg-UCUCCGUCUCCgCCGUCGCc -3'
miRNA:   3'- -AGAGGagAGGGGUAGAGGgGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 8803 0.68 0.674084
Target:  5'- cUCgCCUCUCCUCucUCUCUCCgCGUgugugCGCg -3'
miRNA:   3'- -AGaGGAGAGGGGu-AGAGGGG-GCA-----GCG- -5'
29366 3' -59.7 NC_006151.1 + 8881 0.66 0.778815
Target:  5'- cCUCCgcccgaCUUUCCGacUCUCCUCCGUCu- -3'
miRNA:   3'- aGAGGa-----GAGGGGU--AGAGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 8922 0.77 0.224296
Target:  5'- cUCUCCUCUCCCCGcccccgC-CCCCUGUCcCg -3'
miRNA:   3'- -AGAGGAGAGGGGUa-----GaGGGGGCAGcG- -5'
29366 3' -59.7 NC_006151.1 + 9092 0.67 0.712229
Target:  5'- cCUCCcuucCUCCCCg---CCCCCGacccgccUCGCa -3'
miRNA:   3'- aGAGGa---GAGGGGuagaGGGGGC-------AGCG- -5'
29366 3' -59.7 NC_006151.1 + 9162 0.71 0.479712
Target:  5'- cUUCCUCUCCCCc-CUCCaccgCCCGcccUCGCc -3'
miRNA:   3'- aGAGGAGAGGGGuaGAGG----GGGC---AGCG- -5'
29366 3' -59.7 NC_006151.1 + 9283 0.72 0.443726
Target:  5'- cCUCaCUCUCgCg--CUCuCCCCGUCGCg -3'
miRNA:   3'- aGAG-GAGAGgGguaGAG-GGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 9447 0.67 0.703495
Target:  5'- cUCUCUUCUUCCgCGUCUucuUCCgCGUcCGCu -3'
miRNA:   3'- -AGAGGAGAGGG-GUAGA---GGGgGCA-GCG- -5'
29366 3' -59.7 NC_006151.1 + 10154 0.7 0.517068
Target:  5'- --cCCUCUCCgCGUCUCuuCCCCG-CGUc -3'
miRNA:   3'- agaGGAGAGGgGUAGAG--GGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 10540 0.66 0.769745
Target:  5'- cUCUCCacgCCCCGU-UCCgCCCGgCGCc -3'
miRNA:   3'- -AGAGGagaGGGGUAgAGG-GGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 10608 0.69 0.594789
Target:  5'- cCUCCUCccUCCCCG-CgcgCCCgCGUgCGCu -3'
miRNA:   3'- aGAGGAG--AGGGGUaGa--GGGgGCA-GCG- -5'
29366 3' -59.7 NC_006151.1 + 10756 0.74 0.338272
Target:  5'- cCUCC-CUCUCCGUCUCCCUCGcCu- -3'
miRNA:   3'- aGAGGaGAGGGGUAGAGGGGGCaGcg -5'
29366 3' -59.7 NC_006151.1 + 11271 0.8 0.144638
Target:  5'- cCUCCUcCUCCCCGUCcccguccccgUCCCCCGccCGCu -3'
miRNA:   3'- aGAGGA-GAGGGGUAG----------AGGGGGCa-GCG- -5'
29366 3' -59.7 NC_006151.1 + 11380 0.74 0.345707
Target:  5'- cUCgccgCCUCUUCCCccCUCCUCCGcCGCc -3'
miRNA:   3'- -AGa---GGAGAGGGGuaGAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 11427 0.71 0.498234
Target:  5'- gCUCCUCUCCgCCcacgcaaCUCCuCCCGccCGCg -3'
miRNA:   3'- aGAGGAGAGG-GGua-----GAGG-GGGCa-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.