Results 1 - 20 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 140981 | 1.12 | 0.000853 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCCGUCGCa -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGGCAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 64158 | 0.89 | 0.036668 |
Target: 5'- aUCUCCUCcuucgCCCCGUCcccgCCCCCGUCGCc -3' miRNA: 3'- -AGAGGAGa----GGGGUAGa---GGGGGCAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140813 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140855 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140939 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140897 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140688 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140646 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140729 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140771 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 80630 | 0.85 | 0.06892 |
Target: 5'- cUCUCCcC-CCCCGUCUCCCCCG-CGCc -3' miRNA: 3'- -AGAGGaGaGGGGUAGAGGGGGCaGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 8705 | 0.82 | 0.101528 |
Target: 5'- cUCUCCg-UCUCCGUCUCCgCCGUCGCc -3' miRNA: 3'- -AGAGGagAGGGGUAGAGGgGGCAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 11857 | 0.82 | 0.104156 |
Target: 5'- cUUCCUCUCCCCGUCgaCUCgCGUCGCg -3' miRNA: 3'- aGAGGAGAGGGGUAGa-GGGgGCAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 23116 | 0.82 | 0.109606 |
Target: 5'- cCUCCUCggCCCCGcgcccCUCCUCCGUCGCc -3' miRNA: 3'- aGAGGAGa-GGGGUa----GAGGGGGCAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 11271 | 0.8 | 0.144638 |
Target: 5'- cCUCCUcCUCCCCGUCcccguccccgUCCCCCGccCGCu -3' miRNA: 3'- aGAGGA-GAGGGGUAG----------AGGGGGCa-GCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140793 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140877 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140961 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140668 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140835 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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