miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 140981 1.12 0.000853
Target:  5'- aUCUCCUCUCCCCAUCUCCCCCGUCGCa -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 64158 0.89 0.036668
Target:  5'- aUCUCCUCcuucgCCCCGUCcccgCCCCCGUCGCc -3'
miRNA:   3'- -AGAGGAGa----GGGGUAGa---GGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 140813 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140855 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140939 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140897 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140688 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140646 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140729 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140771 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 80630 0.85 0.06892
Target:  5'- cUCUCCcC-CCCCGUCUCCCCCG-CGCc -3'
miRNA:   3'- -AGAGGaGaGGGGUAGAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 8705 0.82 0.101528
Target:  5'- cUCUCCg-UCUCCGUCUCCgCCGUCGCc -3'
miRNA:   3'- -AGAGGagAGGGGUAGAGGgGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 11857 0.82 0.104156
Target:  5'- cUUCCUCUCCCCGUCgaCUCgCGUCGCg -3'
miRNA:   3'- aGAGGAGAGGGGUAGa-GGGgGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 23116 0.82 0.109606
Target:  5'- cCUCCUCggCCCCGcgcccCUCCUCCGUCGCc -3'
miRNA:   3'- aGAGGAGa-GGGGUa----GAGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 11271 0.8 0.144638
Target:  5'- cCUCCUcCUCCCCGUCcccguccccgUCCCCCGccCGCu -3'
miRNA:   3'- aGAGGA-GAGGGGUAG----------AGGGGGCa-GCG- -5'
29366 3' -59.7 NC_006151.1 + 140793 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140877 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140961 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140668 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140835 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.