miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 41424 0.66 0.778815
Target:  5'- -gUCUUCcgUCCCCAcucccagcCUCCCCCGcUGCc -3'
miRNA:   3'- agAGGAG--AGGGGUa-------GAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 8881 0.66 0.778815
Target:  5'- cCUCCgcccgaCUUUCCGacUCUCCUCCGUCu- -3'
miRNA:   3'- aGAGGa-----GAGGGGU--AGAGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 142579 0.66 0.777913
Target:  5'- cUCUCCUCUCcgguCCCGgcggggcUCUCCUCUaGUCugGCa -3'
miRNA:   3'- -AGAGGAGAG----GGGU-------AGAGGGGG-CAG--CG- -5'
29366 3' -59.7 NC_006151.1 + 26713 0.66 0.769745
Target:  5'- -gUCCUCgUCCCCuuccUCUUCCUCcUCGUc -3'
miRNA:   3'- agAGGAG-AGGGGu---AGAGGGGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 10540 0.66 0.769745
Target:  5'- cUCUCCacgCCCCGU-UCCgCCCGgCGCc -3'
miRNA:   3'- -AGAGGagaGGGGUAgAGG-GGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 40334 0.66 0.769745
Target:  5'- nCUUCUCUCCCC-UCgCCCUCGg--- -3'
miRNA:   3'- aGAGGAGAGGGGuAGaGGGGGCagcg -5'
29366 3' -59.7 NC_006151.1 + 93281 0.66 0.769745
Target:  5'- --gCCgg-CCCCAUCUCCCuucggCCGUCa- -3'
miRNA:   3'- agaGGagaGGGGUAGAGGG-----GGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 87352 0.66 0.76056
Target:  5'- cCUCCagggCCUgGcggCCCCCGUCGCg -3'
miRNA:   3'- aGAGGaga-GGGgUagaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 26437 0.66 0.76056
Target:  5'- -gUCUUCUUCaCCGUCUucgccgucuuccCCCCCGUCc- -3'
miRNA:   3'- agAGGAGAGG-GGUAGA------------GGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 12988 0.66 0.754997
Target:  5'- cCUCCcgaCUCaCCCGUCccgggggauucccugUCCCUCGgggCGCg -3'
miRNA:   3'- aGAGGa--GAG-GGGUAG---------------AGGGGGCa--GCG- -5'
29366 3' -59.7 NC_006151.1 + 18454 0.66 0.751268
Target:  5'- cCUCCUCgUCgUCGUCgUCgCCGUCGUa -3'
miRNA:   3'- aGAGGAG-AGgGGUAGaGGgGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 60584 0.66 0.751268
Target:  5'- ---gCUgUCCCCcgCcgCCCCCGcCGCc -3'
miRNA:   3'- agagGAgAGGGGuaGa-GGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 101799 0.66 0.741877
Target:  5'- -gUCCUCgccgucgcCCCCGUC-CCCgCCGUCc- -3'
miRNA:   3'- agAGGAGa-------GGGGUAGaGGG-GGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 131241 0.67 0.732396
Target:  5'- gUCggCCgccacguacagCUCCCCGUCggaccacgcgCCCCCcUCGCu -3'
miRNA:   3'- -AGa-GGa----------GAGGGGUAGa---------GGGGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 71456 0.67 0.732396
Target:  5'- cCUCCUC-CCUCG-CUCCgCC-UCGCc -3'
miRNA:   3'- aGAGGAGaGGGGUaGAGGgGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 32217 0.67 0.732396
Target:  5'- gCUCCcgCUCCCCcguuUUUCCuCCUGgcCGCg -3'
miRNA:   3'- aGAGGa-GAGGGGu---AGAGG-GGGCa-GCG- -5'
29366 3' -59.7 NC_006151.1 + 6896 0.67 0.722833
Target:  5'- aUUUCUCUCgCCCA-CUUCCUC-UCGCg -3'
miRNA:   3'- aGAGGAGAG-GGGUaGAGGGGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 135056 0.67 0.713196
Target:  5'- gUCcCC-CUCCUCGUCUUCCCC--CGCc -3'
miRNA:   3'- -AGaGGaGAGGGGUAGAGGGGGcaGCG- -5'
29366 3' -59.7 NC_006151.1 + 747 0.67 0.713196
Target:  5'- gCUCCgcggCgcccgCCCCAUuggCUCCCCUcgcgccacgcgGUCGCc -3'
miRNA:   3'- aGAGGa---Ga----GGGGUA---GAGGGGG-----------CAGCG- -5'
29366 3' -59.7 NC_006151.1 + 9092 0.67 0.712229
Target:  5'- cCUCCcuucCUCCCCg---CCCCCGacccgccUCGCa -3'
miRNA:   3'- aGAGGa---GAGGGGuagaGGGGGC-------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.