miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 142783 0.7 0.526591
Target:  5'- cUCUCUggUCUggggCCCAgcUCUCCCCCGagCGCg -3'
miRNA:   3'- -AGAGG--AGAg---GGGU--AGAGGGGGCa-GCG- -5'
29366 3' -59.7 NC_006151.1 + 142579 0.66 0.777913
Target:  5'- cUCUCCUCUCcgguCCCGgcggggcUCUCCUCUaGUCugGCa -3'
miRNA:   3'- -AGAGGAGAG----GGGU-------AGAGGGGG-CAG--CG- -5'
29366 3' -59.7 NC_006151.1 + 140981 1.12 0.000853
Target:  5'- aUCUCCUCUCCCCAUCUCCCCCGUCGCa -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 140961 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140939 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140919 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140897 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140877 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140855 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140835 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140813 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140793 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140771 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140751 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140729 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140710 0.68 0.664204
Target:  5'- nCUCCUCU-CCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAgGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140688 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 140668 0.8 0.148287
Target:  5'- nCUCCUCUCCCCAUCUCCCCn----- -3'
miRNA:   3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5'
29366 3' -59.7 NC_006151.1 + 140646 0.86 0.051679
Target:  5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3'
miRNA:   3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5'
29366 3' -59.7 NC_006151.1 + 137636 0.68 0.644381
Target:  5'- cCUCCgC-CCUCGUCcgcgCCCCCGUCccgGCg -3'
miRNA:   3'- aGAGGaGaGGGGUAGa---GGGGGCAG---CG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.