Results 1 - 20 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29366 | 3' | -59.7 | NC_006151.1 | + | 142783 | 0.7 | 0.526591 |
Target: 5'- cUCUCUggUCUggggCCCAgcUCUCCCCCGagCGCg -3' miRNA: 3'- -AGAGG--AGAg---GGGU--AGAGGGGGCa-GCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 142579 | 0.66 | 0.777913 |
Target: 5'- cUCUCCUCUCcgguCCCGgcggggcUCUCCUCUaGUCugGCa -3' miRNA: 3'- -AGAGGAGAG----GGGU-------AGAGGGGG-CAG--CG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140981 | 1.12 | 0.000853 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCCGUCGCa -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGGCAGCG- -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140961 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140939 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140919 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140897 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140877 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140855 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140835 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140813 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140793 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140771 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140751 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140729 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140710 | 0.68 | 0.664204 |
Target: 5'- nCUCCUCU-CCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAgGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140688 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140668 | 0.8 | 0.148287 |
Target: 5'- nCUCCUCUCCCCAUCUCCCCn----- -3' miRNA: 3'- aGAGGAGAGGGGUAGAGGGGgcagcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 140646 | 0.86 | 0.051679 |
Target: 5'- aUCUCCUCUCCCCAUCUCCCCa-UCu- -3' miRNA: 3'- -AGAGGAGAGGGGUAGAGGGGgcAGcg -5' |
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29366 | 3' | -59.7 | NC_006151.1 | + | 137636 | 0.68 | 0.644381 |
Target: 5'- cCUCCgC-CCUCGUCcgcgCCCCCGUCccgGCg -3' miRNA: 3'- aGAGGaGaGGGGUAGa---GGGGGCAG---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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