miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 34152 0.67 0.6908
Target:  5'- gCUCCgaccccccccCUCCCCcUCUgccacgccccgccaCgCCCCGUCGCc -3'
miRNA:   3'- aGAGGa---------GAGGGGuAGA--------------G-GGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 3665 0.67 0.683931
Target:  5'- cCUCCUCgccgUCCCCGgggCggcgggCCCCgGgcgCGCg -3'
miRNA:   3'- aGAGGAG----AGGGGUa--Ga-----GGGGgCa--GCG- -5'
29366 3' -59.7 NC_006151.1 + 9447 0.67 0.703495
Target:  5'- cUCUCUUCUUCCgCGUCUucuUCCgCGUcCGCu -3'
miRNA:   3'- -AGAGGAGAGGG-GUAGA---GGGgGCA-GCG- -5'
29366 3' -59.7 NC_006151.1 + 80603 0.67 0.703495
Target:  5'- gUC-CCUCUCCCCc---CUCCCGUCu- -3'
miRNA:   3'- -AGaGGAGAGGGGuagaGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 131241 0.67 0.732396
Target:  5'- gUCggCCgccacguacagCUCCCCGUCggaccacgcgCCCCCcUCGCu -3'
miRNA:   3'- -AGa-GGa----------GAGGGGUAGa---------GGGGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 71456 0.67 0.732396
Target:  5'- cCUCCUC-CCUCG-CUCCgCC-UCGCc -3'
miRNA:   3'- aGAGGAGaGGGGUaGAGGgGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 32217 0.67 0.732396
Target:  5'- gCUCCcgCUCCCCcguuUUUCCuCCUGgcCGCg -3'
miRNA:   3'- aGAGGa-GAGGGGu---AGAGG-GGGCa-GCG- -5'
29366 3' -59.7 NC_006151.1 + 6896 0.67 0.722833
Target:  5'- aUUUCUCUCgCCCA-CUUCCUC-UCGCg -3'
miRNA:   3'- aGAGGAGAG-GGGUaGAGGGGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 135056 0.67 0.713196
Target:  5'- gUCcCC-CUCCUCGUCUUCCCC--CGCc -3'
miRNA:   3'- -AGaGGaGAGGGGUAGAGGGGGcaGCG- -5'
29366 3' -59.7 NC_006151.1 + 747 0.67 0.713196
Target:  5'- gCUCCgcggCgcccgCCCCAUuggCUCCCCUcgcgccacgcgGUCGCc -3'
miRNA:   3'- aGAGGa---Ga----GGGGUA---GAGGGGG-----------CAGCG- -5'
29366 3' -59.7 NC_006151.1 + 9092 0.67 0.712229
Target:  5'- cCUCCcuucCUCCCCg---CCCCCGacccgccUCGCa -3'
miRNA:   3'- aGAGGa---GAGGGGuagaGGGGGC-------AGCG- -5'
29366 3' -59.7 NC_006151.1 + 82834 0.67 0.703495
Target:  5'- cCUCCcacgCCgUCGUCguugCCUCCGUCGCg -3'
miRNA:   3'- aGAGGaga-GG-GGUAGa---GGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 93077 0.67 0.703495
Target:  5'- gCUCCgUCUCaccucugCCGUC-CCCCCGcCGUc -3'
miRNA:   3'- aGAGG-AGAGg------GGUAGaGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 25959 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 25994 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26029 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26064 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26099 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 26134 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 25890 0.68 0.674084
Target:  5'- cUCUCC-CUCCaCCGUCUCCaCCCc---- -3'
miRNA:   3'- -AGAGGaGAGG-GGUAGAGG-GGGcagcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.