miRNA display CGI


Results 61 - 80 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 80603 0.67 0.703495
Target:  5'- gUC-CCUCUCCCCc---CUCCCGUCu- -3'
miRNA:   3'- -AGaGGAGAGGGGuagaGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 79014 0.72 0.443726
Target:  5'- gCUCgCUCgcCCCCAg-UCCCCCGaCGCa -3'
miRNA:   3'- aGAG-GAGa-GGGGUagAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 71456 0.67 0.732396
Target:  5'- cCUCCUC-CCUCG-CUCCgCC-UCGCc -3'
miRNA:   3'- aGAGGAGaGGGGUaGAGGgGGcAGCG- -5'
29366 3' -59.7 NC_006151.1 + 65906 0.7 0.506672
Target:  5'- cCUCCUCccccucgUCCUCGUCgggCgCCCCGcCGCc -3'
miRNA:   3'- aGAGGAG-------AGGGGUAGa--G-GGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 65757 0.71 0.452582
Target:  5'- --gCCUCgUCCCCG---UCCCCGUCGCc -3'
miRNA:   3'- agaGGAG-AGGGGUagaGGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 64158 0.89 0.036668
Target:  5'- aUCUCCUCcuucgCCCCGUCcccgCCCCCGUCGCc -3'
miRNA:   3'- -AGAGGAGa----GGGGUAGa---GGGGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 63051 0.69 0.584921
Target:  5'- --nCCUCUCCCCcauccUCUCCCCCa---- -3'
miRNA:   3'- agaGGAGAGGGGu----AGAGGGGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 63026 0.74 0.338272
Target:  5'- -aUCCUCUCCCCcauccUCUCCCCCaUCc- -3'
miRNA:   3'- agAGGAGAGGGGu----AGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 62990 0.74 0.338272
Target:  5'- -aUCCUCUCCCCcauccUCUCCCCCaUCc- -3'
miRNA:   3'- agAGGAGAGGGGu----AGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 62954 0.74 0.338272
Target:  5'- -aUCCUCUCCCCcauccUCUCCCCCaUCc- -3'
miRNA:   3'- agAGGAGAGGGGu----AGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 62918 0.74 0.338272
Target:  5'- -aUCCUCUCCCCcauccUCUCCCCCaUCc- -3'
miRNA:   3'- agAGGAGAGGGGu----AGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 62882 0.74 0.338272
Target:  5'- -aUCCUCUCCCCcauccUCUCCCCCaUCc- -3'
miRNA:   3'- agAGGAGAGGGGu----AGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 62859 0.68 0.674084
Target:  5'- -aUCCUCUcCCCCAUCccUCCCCCn---- -3'
miRNA:   3'- agAGGAGA-GGGGUAG--AGGGGGcagcg -5'
29366 3' -59.7 NC_006151.1 + 60584 0.66 0.751268
Target:  5'- ---gCUgUCCCCcgCcgCCCCCGcCGCc -3'
miRNA:   3'- agagGAgAGGGGuaGa-GGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 59081 0.71 0.452582
Target:  5'- --aCCUCUCCCCcgcaaaGUC-CCCCCGgCGUu -3'
miRNA:   3'- agaGGAGAGGGG------UAGaGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 58557 0.68 0.664204
Target:  5'- nUCUCCUCUUCgCCGcCgccgCCCgCCGgcgUCGCg -3'
miRNA:   3'- -AGAGGAGAGG-GGUaGa---GGG-GGC---AGCG- -5'
29366 3' -59.7 NC_006151.1 + 58534 0.7 0.507614
Target:  5'- cCUCCUCgCCgCC--CUCCCCgGUCGUc -3'
miRNA:   3'- aGAGGAGaGG-GGuaGAGGGGgCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 56793 0.73 0.384613
Target:  5'- --cCCUCcCCCCcUCUCCCCCucucUCGCu -3'
miRNA:   3'- agaGGAGaGGGGuAGAGGGGGc---AGCG- -5'
29366 3' -59.7 NC_006151.1 + 56750 0.69 0.575085
Target:  5'- cCUCCUCUCCC--UCUUCCCCuUCc- -3'
miRNA:   3'- aGAGGAGAGGGguAGAGGGGGcAGcg -5'
29366 3' -59.7 NC_006151.1 + 51335 0.67 0.693737
Target:  5'- gCUCCggCUCCCCGUCcacggCCaggaCCGUgaGCa -3'
miRNA:   3'- aGAGGa-GAGGGGUAGa----GGg---GGCAg-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.