miRNA display CGI


Results 81 - 100 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29366 3' -59.7 NC_006151.1 + 47910 0.68 0.644381
Target:  5'- --gCCUCgaugcgCCCCAUCgCgCCCCGUucCGCu -3'
miRNA:   3'- agaGGAGa-----GGGGUAGaG-GGGGCA--GCG- -5'
29366 3' -59.7 NC_006151.1 + 46772 0.68 0.639417
Target:  5'- gCUCCUC-CCCCucgucuucaccCUCCuccucgaugcggcgCCCGUCGCc -3'
miRNA:   3'- aGAGGAGaGGGGua---------GAGG--------------GGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 45246 0.77 0.208816
Target:  5'- cCUCCUCcccccuugcUCCCUGUCccagUCCCCCGUCGg -3'
miRNA:   3'- aGAGGAG---------AGGGGUAG----AGGGGGCAGCg -5'
29366 3' -59.7 NC_006151.1 + 43034 0.69 0.565287
Target:  5'- aUCUCCUCgaucgCgCCCAgccaCCgCCGUCGCc -3'
miRNA:   3'- -AGAGGAGa----G-GGGUaga-GGgGGCAGCG- -5'
29366 3' -59.7 NC_006151.1 + 42757 0.72 0.409308
Target:  5'- aUC-CCUCUCCCC-UCUCCCCgGgggGUg -3'
miRNA:   3'- -AGaGGAGAGGGGuAGAGGGGgCag-CG- -5'
29366 3' -59.7 NC_006151.1 + 42617 0.73 0.353258
Target:  5'- cCUCCUcCUCCCCcucucCUCCCCCcUCGg -3'
miRNA:   3'- aGAGGA-GAGGGGua---GAGGGGGcAGCg -5'
29366 3' -59.7 NC_006151.1 + 42470 0.77 0.208816
Target:  5'- cCUCCUC-CCCCAaCUCCCCgGgCGCc -3'
miRNA:   3'- aGAGGAGaGGGGUaGAGGGGgCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 42440 0.73 0.392735
Target:  5'- cCUCCUC-CCCCAgCUCCUCgCG-CGCc -3'
miRNA:   3'- aGAGGAGaGGGGUaGAGGGG-GCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 41424 0.66 0.778815
Target:  5'- -gUCUUCcgUCCCCAcucccagcCUCCCCCGcUGCc -3'
miRNA:   3'- agAGGAG--AGGGGUa-------GAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 40621 0.68 0.664204
Target:  5'- uUCUCCUcCUCCCgCGg-UCCCCCGgUCc- -3'
miRNA:   3'- -AGAGGA-GAGGG-GUagAGGGGGC-AGcg -5'
29366 3' -59.7 NC_006151.1 + 40487 0.79 0.163734
Target:  5'- cCUCCUCUCCU--UCUCCUCCG-CGCg -3'
miRNA:   3'- aGAGGAGAGGGguAGAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 40360 0.69 0.614596
Target:  5'- -gUCCUCgUCCUCGUCcucgUCCCCGUCc- -3'
miRNA:   3'- agAGGAG-AGGGGUAGa---GGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 40334 0.66 0.769745
Target:  5'- nCUUCUCUCCCC-UCgCCCUCGg--- -3'
miRNA:   3'- aGAGGAGAGGGGuAGaGGGGGCagcg -5'
29366 3' -59.7 NC_006151.1 + 40310 0.74 0.345707
Target:  5'- gCUCCUCgaggCCCU-UCUCCUCCGUCu- -3'
miRNA:   3'- aGAGGAGa---GGGGuAGAGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 38499 0.75 0.276632
Target:  5'- cUCUCCggCUCCuCCGgcuacgccagCUCCCCCGcCGCc -3'
miRNA:   3'- -AGAGGa-GAGG-GGUa---------GAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 37205 0.7 0.517068
Target:  5'- cCUCCUCcgCCUC--CUCCUCCGcCGCg -3'
miRNA:   3'- aGAGGAGa-GGGGuaGAGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 37082 0.71 0.479712
Target:  5'- cCUCCUCgUCCUCGUcCUCCUCCGagGg -3'
miRNA:   3'- aGAGGAG-AGGGGUA-GAGGGGGCagCg -5'
29366 3' -59.7 NC_006151.1 + 37049 0.7 0.545829
Target:  5'- cCUCCUCgUCCUCGUCcUCCUCGUCc- -3'
miRNA:   3'- aGAGGAG-AGGGGUAGaGGGGGCAGcg -5'
29366 3' -59.7 NC_006151.1 + 37004 0.69 0.565287
Target:  5'- cCUCCgCcCCCCGgg-CCCCCGcCGCc -3'
miRNA:   3'- aGAGGaGaGGGGUagaGGGGGCaGCG- -5'
29366 3' -59.7 NC_006151.1 + 36770 0.68 0.650335
Target:  5'- gUCUCCUCcaaCCCCAacuccaaCUCCaacuccaccaccaCCGUCGCc -3'
miRNA:   3'- -AGAGGAGa--GGGGUa------GAGGg------------GGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.