Results 101 - 120 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 5' | -61.1 | NC_006151.1 | + | 58402 | 0.7 | 0.405581 |
Target: 5'- aGCCgGCCaugGCgCGCagcugGGCGUGCGGCa -3' miRNA: 3'- -CGGgUGGa--CG-GCGga---CUGCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 138759 | 0.7 | 0.403061 |
Target: 5'- cGCCUACCUGUgggacgugcacuuuCGCCUGGCGgccgucgcGUGGCUc -3' miRNA: 3'- -CGGGUGGACG--------------GCGGACUGCa-------CGUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 38225 | 0.71 | 0.388971 |
Target: 5'- cGCCCGCgagGCCGCCUGgaccuACGccGCGGCc -3' miRNA: 3'- -CGGGUGga-CGGCGGAC-----UGCa-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 119364 | 0.71 | 0.388971 |
Target: 5'- -aCCACCUGgUGa-UGGCGUGCGGCUu -3' miRNA: 3'- cgGGUGGACgGCggACUGCACGUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 76891 | 0.71 | 0.372812 |
Target: 5'- aGCgCCGCCUGCUGCgCcGGCGagaGCGGCa -3' miRNA: 3'- -CG-GGUGGACGGCG-GaCUGCa--CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 130640 | 0.71 | 0.372812 |
Target: 5'- aGCgCCGCCgagGCCGCCUGcgGCGUGaacguCAGUg -3' miRNA: 3'- -CG-GGUGGa--CGGCGGAC--UGCAC-----GUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 140295 | 0.71 | 0.372812 |
Target: 5'- cGUgCGCCggcGCCGCCUgcggGACGUGC-GCUg -3' miRNA: 3'- -CGgGUGGa--CGGCGGA----CUGCACGuCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 118342 | 0.71 | 0.364906 |
Target: 5'- cGCCCGCCcucucGCgCGCCUG-CGagGCGGCg -3' miRNA: 3'- -CGGGUGGa----CG-GCGGACuGCa-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 3875 | 0.71 | 0.349444 |
Target: 5'- cGCCCGCC-GCCGCC-GGCGccgGC-GCUg -3' miRNA: 3'- -CGGGUGGaCGGCGGaCUGCa--CGuCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 114174 | 0.71 | 0.349444 |
Target: 5'- gGCCCuCgUGCUgGCCU-ACGUGCAGCa -3' miRNA: 3'- -CGGGuGgACGG-CGGAcUGCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 99317 | 0.71 | 0.349444 |
Target: 5'- cGCgCGCC--CCGCCUGACGgacgcGCAGCg -3' miRNA: 3'- -CGgGUGGacGGCGGACUGCa----CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 81593 | 0.71 | 0.349444 |
Target: 5'- cGCgUCGCCgggGCCGCC-GGCGcGCAGCa -3' miRNA: 3'- -CG-GGUGGa--CGGCGGaCUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 55586 | 0.72 | 0.341889 |
Target: 5'- cGCgCUACgUGCCGCCguacgagucgGACGUGgAGCg -3' miRNA: 3'- -CG-GGUGgACGGCGGa---------CUGCACgUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 72250 | 0.72 | 0.341889 |
Target: 5'- uGCCCGCg-GCCGCC-GACGccgaGCGGCg -3' miRNA: 3'- -CGGGUGgaCGGCGGaCUGCa---CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 98440 | 0.72 | 0.327137 |
Target: 5'- uGCUCGCCgagaaccugGCCgGCCUGGCGcUGUGGCg -3' miRNA: 3'- -CGGGUGGa--------CGG-CGGACUGC-ACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 109893 | 0.72 | 0.312862 |
Target: 5'- cGCCCAuCCU-CCGCCgcGGCG-GCAGCa -3' miRNA: 3'- -CGGGU-GGAcGGCGGa-CUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 86537 | 0.72 | 0.305904 |
Target: 5'- cGCCuCGCCcgagGCCGCCgUGGCGccguuccgGCAGCUc -3' miRNA: 3'- -CGG-GUGGa---CGGCGG-ACUGCa-------CGUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 140022 | 0.72 | 0.299065 |
Target: 5'- gGCCgACCUGCacCGCCuguuUGAgGUGCGGCc -3' miRNA: 3'- -CGGgUGGACG--GCGG----ACUgCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 67700 | 0.73 | 0.289689 |
Target: 5'- uCCCGCUUGuCCGCCUGGCGccacaggcacggcGCGGCg -3' miRNA: 3'- cGGGUGGAC-GGCGGACUGCa------------CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 82664 | 0.73 | 0.285743 |
Target: 5'- gGCCCACCcugcgGCgCGCCgcgGGCGaggGCGGCg -3' miRNA: 3'- -CGGGUGGa----CG-GCGGa--CUGCa--CGUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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