Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 5' | -61.1 | NC_006151.1 | + | 98282 | 0.69 | 0.476242 |
Target: 5'- gGCCgACCacGCCGUCgccacgGugGUGCAGUc -3' miRNA: 3'- -CGGgUGGa-CGGCGGa-----CugCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 32937 | 0.69 | 0.467067 |
Target: 5'- cCCCGCUc-CCGCCUGugGUGCcGUg -3' miRNA: 3'- cGGGUGGacGGCGGACugCACGuCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 122550 | 0.69 | 0.467067 |
Target: 5'- gGCCCGCCUcGCggCGCCUGuACGccgugagcgagcUGCAGUUu -3' miRNA: 3'- -CGGGUGGA-CG--GCGGAC-UGC------------ACGUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 77013 | 0.69 | 0.466154 |
Target: 5'- gGCCCGCgaGCCguggagcGCCagGACGagGCAGCa -3' miRNA: 3'- -CGGGUGgaCGG-------CGGa-CUGCa-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 62035 | 0.69 | 0.457983 |
Target: 5'- aGCCCcCCgcugcGCCGCgUGGCgGUGCAcGCg -3' miRNA: 3'- -CGGGuGGa----CGGCGgACUG-CACGU-CGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 56186 | 0.69 | 0.457983 |
Target: 5'- cGCUgGCCgUGCCGCCggUGGCGcUGCcGCa -3' miRNA: 3'- -CGGgUGG-ACGGCGG--ACUGC-ACGuCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 92666 | 0.69 | 0.457983 |
Target: 5'- cGCCCugCUGCCggcgGCCgggGACGcGC-GCUc -3' miRNA: 3'- -CGGGugGACGG----CGGa--CUGCaCGuCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 48574 | 0.69 | 0.457983 |
Target: 5'- aCCCugcgGCCUGCCGCCcGGgGUGC-GCc -3' miRNA: 3'- cGGG----UGGACGGCGGaCUgCACGuCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 125386 | 0.69 | 0.457983 |
Target: 5'- gGCCgCAUCgcgGCCGCCUG--GUGCgAGCUg -3' miRNA: 3'- -CGG-GUGGa--CGGCGGACugCACG-UCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 54293 | 0.69 | 0.448996 |
Target: 5'- cGCuCCACCgagGCCGCC----GUGCGGCa -3' miRNA: 3'- -CG-GGUGGa--CGGCGGacugCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 52444 | 0.69 | 0.448996 |
Target: 5'- cGCagCGCC-GCCGCCgUGACG-GCGGCc -3' miRNA: 3'- -CGg-GUGGaCGGCGG-ACUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 17962 | 0.69 | 0.44721 |
Target: 5'- cGCCCGCCUGCCGgCgucccacGCGGCg -3' miRNA: 3'- -CGGGUGGACGGCgGacugca-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 138577 | 0.7 | 0.440106 |
Target: 5'- cGCCCGCCUGCCccacCCcGuCGUGUAcGCg -3' miRNA: 3'- -CGGGUGGACGGc---GGaCuGCACGU-CGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 57609 | 0.7 | 0.440106 |
Target: 5'- gGCCUcgGCCgcgGCCGCCUcGACG-GCGcGCg -3' miRNA: 3'- -CGGG--UGGa--CGGCGGA-CUGCaCGU-CGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 21571 | 0.7 | 0.431317 |
Target: 5'- aGCCCGCCgaggGCCGCgcggggucgaUGGCGUaCGGCg -3' miRNA: 3'- -CGGGUGGa---CGGCGg---------ACUGCAcGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 109161 | 0.7 | 0.422632 |
Target: 5'- uCCCGCC-GCCGCagccUGUGCAGCUg -3' miRNA: 3'- cGGGUGGaCGGCGgacuGCACGUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 109303 | 0.7 | 0.422632 |
Target: 5'- -gCgGCCcGCCGCCUcGGCG-GCAGCa -3' miRNA: 3'- cgGgUGGaCGGCGGA-CUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 38068 | 0.7 | 0.422632 |
Target: 5'- gGCCCGCCUGCC-UCgagGAgGUGaCGGCc -3' miRNA: 3'- -CGGGUGGACGGcGGa--CUgCAC-GUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 106183 | 0.7 | 0.414053 |
Target: 5'- cGCgCACCcGCCGCUggagccGGCGgUGCGGCUc -3' miRNA: 3'- -CGgGUGGaCGGCGGa-----CUGC-ACGUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 58402 | 0.7 | 0.405581 |
Target: 5'- aGCCgGCCaugGCgCGCagcugGGCGUGCGGCa -3' miRNA: 3'- -CGGgUGGa--CG-GCGga---CUGCACGUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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