miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 65767 0.68 0.542728
Target:  5'- cGUCC-CCgucGCCGCC-GGCG-GCGGCg -3'
miRNA:   3'- -CGGGuGGa--CGGCGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 107057 0.68 0.542728
Target:  5'- aGCCgGCCUGCCucguGCUggugGACucGCAGCUg -3'
miRNA:   3'- -CGGgUGGACGG----CGGa---CUGcaCGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 104418 0.68 0.542728
Target:  5'- gGCCCGCgCcGCCGCCggcauggGGCGcuuCAGCUa -3'
miRNA:   3'- -CGGGUG-GaCGGCGGa------CUGCac-GUCGA- -5'
29367 5' -61.1 NC_006151.1 + 117637 0.68 0.531084
Target:  5'- uGCCCACgUGCaCGCCgcgcugcuccggGGCGUccaggcaccGCGGCg -3'
miRNA:   3'- -CGGGUGgACG-GCGGa-----------CUGCA---------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 61445 0.68 0.523371
Target:  5'- cGCCCGCCcgcguccGCCGCC--AUGUGCGGg- -3'
miRNA:   3'- -CGGGUGGa------CGGCGGacUGCACGUCga -5'
29367 5' -61.1 NC_006151.1 + 78745 0.68 0.523371
Target:  5'- gGCCCACgUccGCCGUCUG-CGccgagGCGGCg -3'
miRNA:   3'- -CGGGUGgA--CGGCGGACuGCa----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 58568 0.68 0.523371
Target:  5'- -gCCGCC-GCCGCCcgccGGCGUcGCGGCc -3'
miRNA:   3'- cgGGUGGaCGGCGGa---CUGCA-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 38332 0.68 0.523371
Target:  5'- cGCCCgGCCUGCCcccGCuCUGGCccgaGCAGCc -3'
miRNA:   3'- -CGGG-UGGACGG---CG-GACUGca--CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 7101 0.68 0.523371
Target:  5'- gGCCCGCuCUGCgGCCaucuUGGCc-GCGGCg -3'
miRNA:   3'- -CGGGUG-GACGgCGG----ACUGcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 104550 0.68 0.523371
Target:  5'- gGCCgAgCUgGCCGCCcugGGCGcGCGGCg -3'
miRNA:   3'- -CGGgUgGA-CGGCGGa--CUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 129679 0.68 0.513792
Target:  5'- cGCgCACCguccgGCCGCCgugGACc-GCGGCg -3'
miRNA:   3'- -CGgGUGGa----CGGCGGa--CUGcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 129520 0.68 0.513792
Target:  5'- -gCCGCUUGCCGCC-GACGggGgGGCc -3'
miRNA:   3'- cgGGUGGACGGCGGaCUGCa-CgUCGa -5'
29367 5' -61.1 NC_006151.1 + 11041 0.68 0.512838
Target:  5'- gGCCgGCCggggGCCcgGCCUGGacgcgggccacacUGUGCGGCg -3'
miRNA:   3'- -CGGgUGGa---CGG--CGGACU-------------GCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 123888 0.68 0.504285
Target:  5'- cGCUCGCC-GCgGCCccGcCGUGCGGCg -3'
miRNA:   3'- -CGGGUGGaCGgCGGa-CuGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 113765 0.68 0.504285
Target:  5'- aGCCCACUcccgaGCCGCCUuccugcgcGACGcacacgcgcugcUGCGGCg -3'
miRNA:   3'- -CGGGUGGa----CGGCGGA--------CUGC------------ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 20307 0.68 0.504285
Target:  5'- cGCCCGCC-GUgGCgUUGGCG-GCGGCg -3'
miRNA:   3'- -CGGGUGGaCGgCG-GACUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 106980 0.69 0.494855
Target:  5'- cCCCAUCgagaacGCgUGCCUGGCGccGCAGCUg -3'
miRNA:   3'- cGGGUGGa-----CG-GCGGACUGCa-CGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 49145 0.69 0.494855
Target:  5'- cGCCCGCCcacgGCUGCCUGGag-GCcugGGCg -3'
miRNA:   3'- -CGGGUGGa---CGGCGGACUgcaCG---UCGa -5'
29367 5' -61.1 NC_006151.1 + 15915 0.69 0.485506
Target:  5'- gGCCCGCC-GCCGCCc--CGUGaGGCg -3'
miRNA:   3'- -CGGGUGGaCGGCGGacuGCACgUCGa -5'
29367 5' -61.1 NC_006151.1 + 95915 0.69 0.485506
Target:  5'- uGCCgCGCgUGCaguCGCCcgagGGCGUGCGGUUg -3'
miRNA:   3'- -CGG-GUGgACG---GCGGa---CUGCACGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.