miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 83416 0.66 0.652026
Target:  5'- -aCCACCagguUGCCGCCggggGGCuccccggGCAGCg -3'
miRNA:   3'- cgGGUGG----ACGGCGGa---CUGca-----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 84915 0.67 0.582089
Target:  5'- cGCCgCGCgCggcGCCGCCUccGGCGUGCucuucGGCa -3'
miRNA:   3'- -CGG-GUG-Ga--CGGCGGA--CUGCACG-----UCGa -5'
29367 5' -61.1 NC_006151.1 + 85135 0.67 0.582089
Target:  5'- uGCCugCACCUGgUGCaccGCGUGCGGCa -3'
miRNA:   3'- -CGG--GUGGACgGCGgacUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 85349 0.66 0.652026
Target:  5'- uGCUCGCCgcgcugGCgCGCCUGcGCGUGgucccCGGCg -3'
miRNA:   3'- -CGGGUGGa-----CG-GCGGAC-UGCAC-----GUCGa -5'
29367 5' -61.1 NC_006151.1 + 86053 0.66 0.632007
Target:  5'- aGUUCGCC-GCCGCCUGAgCccGCAGUc -3'
miRNA:   3'- -CGGGUGGaCGGCGGACU-GcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 86088 0.66 0.632007
Target:  5'- cGCgCCGCC-GCCGCCauggggcccgUGuACGUGUccGGCUa -3'
miRNA:   3'- -CG-GGUGGaCGGCGG----------AC-UGCACG--UCGA- -5'
29367 5' -61.1 NC_006151.1 + 86537 0.72 0.305904
Target:  5'- cGCCuCGCCcgagGCCGCCgUGGCGccguuccgGCAGCUc -3'
miRNA:   3'- -CGG-GUGGa---CGGCGG-ACUGCa-------CGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 87441 0.66 0.662016
Target:  5'- uGCCCGCC-GCCGCC--GCG-GCcGCc -3'
miRNA:   3'- -CGGGUGGaCGGCGGacUGCaCGuCGa -5'
29367 5' -61.1 NC_006151.1 + 90712 0.67 0.601999
Target:  5'- cGCCCGCC--CCGCa-GGCG-GCGGCg -3'
miRNA:   3'- -CGGGUGGacGGCGgaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 91481 0.66 0.64202
Target:  5'- -aCCugCUcGCCGCgcacgCUGGCGUGCaccAGCa -3'
miRNA:   3'- cgGGugGA-CGGCG-----GACUGCACG---UCGa -5'
29367 5' -61.1 NC_006151.1 + 92045 0.67 0.572182
Target:  5'- cGCCCgcuGCCUGCugCGCCUGcuGCGcaUGCuGCa -3'
miRNA:   3'- -CGGG---UGGACG--GCGGAC--UGC--ACGuCGa -5'
29367 5' -61.1 NC_006151.1 + 92666 0.69 0.457983
Target:  5'- cGCCCugCUGCCggcgGCCgggGACGcGC-GCUc -3'
miRNA:   3'- -CGGGugGACGG----CGGa--CUGCaCGuCGA- -5'
29367 5' -61.1 NC_006151.1 + 95915 0.69 0.485506
Target:  5'- uGCCgCGCgUGCaguCGCCcgagGGCGUGCGGUUg -3'
miRNA:   3'- -CGG-GUGgACG---GCGGa---CUGCACGUCGA- -5'
29367 5' -61.1 NC_006151.1 + 97717 0.68 0.552496
Target:  5'- gGCCCAggaGCCcCCcgagGACGUGCAGCg -3'
miRNA:   3'- -CGGGUggaCGGcGGa---CUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 98282 0.69 0.476242
Target:  5'- gGCCgACCacGCCGUCgccacgGugGUGCAGUc -3'
miRNA:   3'- -CGGgUGGa-CGGCGGa-----CugCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 98440 0.72 0.327137
Target:  5'- uGCUCGCCgagaaccugGCCgGCCUGGCGcUGUGGCg -3'
miRNA:   3'- -CGGGUGGa--------CGG-CGGACUGC-ACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 99317 0.71 0.349444
Target:  5'- cGCgCGCC--CCGCCUGACGgacgcGCAGCg -3'
miRNA:   3'- -CGgGUGGacGGCGGACUGCa----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 101544 0.67 0.59203
Target:  5'- gGCgCGCCUG-CGCCcggcgGACGUGUAcGCg -3'
miRNA:   3'- -CGgGUGGACgGCGGa----CUGCACGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 101732 0.7 0.405581
Target:  5'- aCCCGauggcCCUGCCGCCgGACccgGCGGCc -3'
miRNA:   3'- cGGGU-----GGACGGCGGaCUGca-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 103806 0.66 0.671982
Target:  5'- gGCCgCGCUgucgGCgGCCgUGGCG-GCGGCc -3'
miRNA:   3'- -CGG-GUGGa---CGgCGG-ACUGCaCGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.